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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17523 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 24012.3 Da PI: 8.2185 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9e-17 | 157 | 202 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT eEd ll v+++G g W+ Ia +++ gR++kqc++rw + EMT17523 157 RGSWTVEEDTLLRAKVHEFGIGKWTNIAMYLP-GRSGKQCRERWTNQ 202 89******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.639 | 150 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-15 | 156 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 157 | 202 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.86E-16 | 157 | 211 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-19 | 157 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.59E-16 | 159 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGVVPFYIRR IPIDPSLTQA FLPQKSQRLL HFFLLCLPHL YRKCSCCHCS DPTSGAAPMA 60 EWSACFDWDV AASAAENHYT SSGHGGVAQY FVHNDGGAPV GVVVIPGARS RASGCISEMD 120 PTSFPGYGSS NVPMAIAAPA RGPPRARSSG QQLRQFRGSW TVEEDTLLRA KVHEFGIGKW 180 TNIAMYLPGR SGKQCRERWT NQLDLNIEVI SQDLNFLTP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188726.1 | 1e-106 | transcription factor MYB46-like | ||||
TrEMBL | N1R096 | 1e-163 | N1R096_AEGTA; Transcription factor MYB98 | ||||
STRING | EMT17523 | 1e-164 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22654 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-13 | myb domain protein 98 |