PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17488
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 217aa    MW: 23514.6 Da    PI: 6.9028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17488genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.9e-15127173455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  EMT17488 127 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVKYVKEQQ 173
               699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16127183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17127183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-12127173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-15128177No hitNo description
SMARTSM003533.6E-15129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVVVSLGEAS QQANVGAVRV EEGQRAGDRP GGELHQVLAR SSMYQLETMD DSSLFLQWAV  60
DTLQHDHPPL AAAYAAGDNF PSLEELRRSA LQHGTAPAGM AAHVPPPSRR ASAKSAARAG  120
HAPYAQDHIM AERKRREKIN RRFIELSTVI PGLKKMDKAT ILSDAVKYVK EQQEKLKALE  180
DRNLRSVAVE SVVDEGFSVT AEEIVGKIEA ALAAPTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERKRRE
2132137RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646671e-112AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175443.16e-51transcription factor bHLH18-like
TrEMBLN1R0S61e-156N1R0S6_AEGTA; Transcription factor bHLH25
STRINGEMT174881e-157(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4926622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-18bHLH family protein