PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

EMT17435

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 439aa MW: 48762.3 Da PI: 4.9152

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT17435	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.4	9.4e-08	332	424	2	72
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvkkek 72 fYn+Y+ +GF vrk++++ + g + f+C++ k +e++k ++++r++++ + tgC+akl+ +k+ EMT17435 332 FYNNYSCLCGFAVRKASNYCGqtSAGGGESRCIFRCNRARKVLDEEQKkakrqqrkerwqqrtrklapETRKRKRNVIDVTGCQAKLVFTKKM 424 9**************9976335667788999**9987777667899***********99999**************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-5	332	424	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MAVKNSSKCV VLFSESRNMG DKEQSMCMTF TQKIANEVFY GGDYIGTQPV RSQYPGMWFD 60 PRISQKQCDG VNFLQMIPPY SLAYPVHQIG TSTHPLAVVS NNSVPVTGQQ ATPVVKHKEN 120 ALVLSPGFGM NMSYTQMLLA AESEDPLFGS PHTKYYPVGA ENETFMITGR NTRLSELVDM 180 DNPKSSKYIE QDDPSNWNNN QTDFQEADLA LQTVTWDDGV PAHGAELLQA LGICPGDNQN 240 EDDTCSEDSD TDPSAFNKVL VVGEEDANQV VAGHGDNEVV DDDVNQFSPD DIDNFLENDS 300 VLAAQTCSQE VRSRHVPQMG MDFETSKGAQ AFYNNYSCLC GFAVRKASNY CGQTSAGGGE 360 SRCIFRCNRA RKVLDEEQKK AKRQQRKERW QQRTRKLAPE TRKRKRNVID VTGCQAKLVF 420 TKKMTDGLSQ TSTSSTTMT

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MAVKNSSKCV VLFSESRNMG DKEQSMCMTF TQKIANEVFY GGDYIGTQPV RSQYPGMWFD  60
PRISQKQCDG VNFLQMIPPY SLAYPVHQIG TSTHPLAVVS NNSVPVTGQQ ATPVVKHKEN  120
ALVLSPGFGM NMSYTQMLLA AESEDPLFGS PHTKYYPVGA ENETFMITGR NTRLSELVDM  180
DNPKSSKYIE QDDPSNWNNN QTDFQEADLA LQTVTWDDGV PAHGAELLQA LGICPGDNQN  240
EDDTCSEDSD TDPSAFNKVL VVGEEDANQV VAGHGDNEVV DDDVNQFSPD DIDNFLENDS  300
VLAAQTCSQE VRSRHVPQMG MDFETSKGAQ AFYNNYSCLC GFAVRKASNY CGQTSAGGGE  360
SRCIFRCNRA RKVLDEEQKK AKRQQRKERW QQRTRKLAPE TRKRKRNVID VTGCQAKLVF  420
TKKMTDGLSQ TSTSSTTMT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195491.1	0.0	uncharacterized protein LOC109781299
TrEMBL	R7WCN8	0.0	R7WCN8_AEGTA; Uncharacterized protein
STRING	EMT17435	0.0	(Aegilops tauschii)