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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | FAR1 | ||||||||
Protein Properties | Length: 439aa MW: 48762.3 Da PI: 4.9152 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.4 | 9.4e-08 | 332 | 424 | 2 | 72 |
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkvkkek 72 fYn+Y+ +GF vrk++++ + g + f+C++ k +e++k ++++r++++ + tgC+akl+ +k+ EMT17435 332 FYNNYSCLCGFAVRKASNYCGqtSAGGGESRCIFRCNRARKVLDEEQKkakrqqrkerwqqrtrklapETRKRKRNVIDVTGCQAKLVFTKKM 424 9****************9976335667788999******9987777667899***************99999****************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-5 | 332 | 424 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MAVKNSSKCV VLFSESRNMG DKEQSMCMTF TQKIANEVFY GGDYIGTQPV RSQYPGMWFD 60 PRISQKQCDG VNFLQMIPPY SLAYPVHQIG TSTHPLAVVS NNSVPVTGQQ ATPVVKHKEN 120 ALVLSPGFGM NMSYTQMLLA AESEDPLFGS PHTKYYPVGA ENETFMITGR NTRLSELVDM 180 DNPKSSKYIE QDDPSNWNNN QTDFQEADLA LQTVTWDDGV PAHGAELLQA LGICPGDNQN 240 EDDTCSEDSD TDPSAFNKVL VVGEEDANQV VAGHGDNEVV DDDVNQFSPD DIDNFLENDS 300 VLAAQTCSQE VRSRHVPQMG MDFETSKGAQ AFYNNYSCLC GFAVRKASNY CGQTSAGGGE 360 SRCIFRCNRA RKVLDEEQKK AKRQQRKERW QQRTRKLAPE TRKRKRNVID VTGCQAKLVF 420 TKKMTDGLSQ TSTSSTTMT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195491.1 | 0.0 | uncharacterized protein LOC109781299 | ||||
TrEMBL | R7WCN8 | 0.0 | R7WCN8_AEGTA; Uncharacterized protein | ||||
STRING | EMT17435 | 0.0 | (Aegilops tauschii) |