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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 35484 Da PI: 4.8538 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.7e-09 | 102 | 125 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 g W+tIa ++ gRt++++k++w+++ EMT17303 102 G-WSTIATHLE-GRTDNEIKNYWNTH 125 4.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.65E-9 | 83 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.806 | 84 | 126 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.2E-6 | 102 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-12 | 102 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-5 | 103 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSRGKFDDER TSGIMVMSTQ IQKQHRIELQ EQEPRCQYIW SYVARSPEQP PTLTYIVHTP 60 IVYGIGHTQT LPMLMAKAEE EWRENSQLLQ HLSRVPCQTV MGWSTIATHL EGRTDNEIKN 120 YWNTHIRKKL LRMGVDPVTH QQLPPDQTNH DVNGAAPALL PEALLLAAAA VSLGGLDPGA 180 LRQAQVLQQL LQAIGSNNST TGLIANLAAA NTLLNSSSSI VPNQMNYLQT GYLCNTSNFA 240 EQHVVQQQLT NDTSPGTSTF AAAERADQLC NTAASYNVAP AGDWPPAQEF GGLLEPMMEL 300 PGLCSLEGDS FWKDILEDSY CL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470090 | 5e-51 | AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds. | |||
GenBank | AM156904 | 5e-51 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT034484 | 5e-51 | BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds. | |||
GenBank | BT054398 | 5e-51 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 5e-51 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169245.1 | 1e-154 | myb-related protein Zm38-like | ||||
TrEMBL | R7W825 | 0.0 | R7W825_AEGTA; Transcription factor MYB39 | ||||
STRING | EMT17303 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-17 | myb domain protein 93 |