 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT16810 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
C2H2 |
| Protein Properties |
Length: 159aa MW: 17035.5 Da PI: 11.2723 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT16810 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.3 | 0.00053 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C Cg++F + L H +H
EMT16810 48 YECRTCGRRFATFQALGGHRTSH 70
99**********99998888777 PP
|
| 2 | zf-C2H2 | 15.5 | 4.8e-05 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ Cg F++ L H+r+H
EMT16810 98 HRCGTCGHAFPTGQALGGHMRRH 120
79********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 159 aa
Download sequence Send
to blast |
MTKDVASGDT QSPIKLIELL LKLSSPAASS RVIGKNKRVQ LQAAGGAYEC RTCGRRFATF 60
QALGGHRTSH KRPRVRAHGL DLLLGARPGK ARAPMQLHRC GTCGHAFPTG QALGGHMRRH 120
RPAVAAATWT ETATSSSTSC LSVSAQHDDA DWPTLIQFI
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC134045 | 3e-35 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. |
| GenBank | AK062491 | 3e-35 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. |
| GenBank | AK105226 | 3e-35 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. |
| GenBank | AP014967 | 3e-35 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AY305866 | 3e-35 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. |
| GenBank | CP012619 | 3e-35 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
| GenBank | CT833322 | 3e-35 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
