PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | FAR1 | ||||||||
Protein Properties | Length: 540aa MW: 61008 Da PI: 8.7468 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.8 | 1.8e-23 | 121 | 245 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................tekerrtraetrtgCkak 65 Yn+YA ++GFs+++++s+++ r++e +k++f+C+k k++ ++ ++k+r++++ ++t+Ckak EMT16592 121 YNSYALRMGFSIKMNTSRRTPRTNELIKQQFCCNKFKKPKADDGGaeappvldpipdpksvysdeemeeeppifaeeeagtskKKKKRKRETIKQTQCKAK 221 ***********************************999999988899**********************************988888999999******** PP FAR1 66 lkvkkekdgkwevtkleleHnHela 90 + vk+ dg+wevt+++ +HnH+l+ EMT16592 222 MLVKLI-DGRWEVTHFVRDHNHPLV 245 ******.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-21 | 121 | 245 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 8.691 | 330 | 366 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.4E-4 | 343 | 365 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MGVCGSIQKR KKMFELNELP PYRNELPHDT DQQQPSIQQG NGQKMVDLFT TRRQVMMSES 60 HTLDDTGTEE NVPGPTRTEL GAGAVDGAVQ GEEGEDEAGS QPMEPYVGMR FDSLQIAKDN 120 YNSYALRMGF SIKMNTSRRT PRTNELIKQQ FCCNKFKKPK ADDGGAEAPP VLDPIPDPKS 180 VYSDEEMEEE PPIFAEEEAG TSKKKKKRKR ETIKQTQCKA KMLVKLIDGR WEVTHFVRDH 240 NHPLVNKPSL SKYLRSHQGI SPDEKEFLRI LYNCNLTTEA SLQTYTRDLY RKFREEFELI 300 GRYNAFQVGA DIFELRPNQE FVAKYGSRNY LVQARVEEGS YLCECCKMDK DDILCCHILK 360 VFTHIGVDVN RKGTGYEQPD EMPPQSKKQI RERNMIYDFR KLAKFASGSD PAQAIVYKHM 420 RAARTEIGHL NMSKKKKKPT AATGPSDDGN PRGPPPPPGN NQGAHYPGDR DGPTAPLEAA 480 SPAQSSDDFV PRDPPRSSTK GRAKSRRYKS ALELHPKKKN KCSQCQSTEH TAGVCPLRLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | KKKKRK |
2 | 203 | 209 | KKKKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | R7W5Z2 | 0.0 | R7W5Z2_AEGTA; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
STRING | EMT16592 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 2e-13 | far-red elongated hypocotyls 3 |