PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16592
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family FAR1
Protein Properties Length: 540aa    MW: 61008 Da    PI: 8.7468
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16592genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.81.8e-23121245390
      FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......................................tekerrtraetrtgCkak 65 
               Yn+YA ++GFs+++++s+++ r++e +k++f+C+k  k++ ++                                        ++k+r++++ ++t+Ckak
  EMT16592 121 YNSYALRMGFSIKMNTSRRTPRTNELIKQQFCCNKFKKPKADDGGaeappvldpipdpksvysdeemeeeppifaeeeagtskKKKKRKRETIKQTQCKAK 221
               ***********************************999999988899**********************************988888999999******** PP

      FAR1  66 lkvkkekdgkwevtkleleHnHela 90 
               + vk+  dg+wevt+++ +HnH+l+
  EMT16592 222 MLVKLI-DGRWEVTHFVRDHNHPLV 245
               ******.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-21121245IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.691330366IPR007527Zinc finger, SWIM-type
PfamPF044346.4E-4343365IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGVCGSIQKR KKMFELNELP PYRNELPHDT DQQQPSIQQG NGQKMVDLFT TRRQVMMSES  60
HTLDDTGTEE NVPGPTRTEL GAGAVDGAVQ GEEGEDEAGS QPMEPYVGMR FDSLQIAKDN  120
YNSYALRMGF SIKMNTSRRT PRTNELIKQQ FCCNKFKKPK ADDGGAEAPP VLDPIPDPKS  180
VYSDEEMEEE PPIFAEEEAG TSKKKKKRKR ETIKQTQCKA KMLVKLIDGR WEVTHFVRDH  240
NHPLVNKPSL SKYLRSHQGI SPDEKEFLRI LYNCNLTTEA SLQTYTRDLY RKFREEFELI  300
GRYNAFQVGA DIFELRPNQE FVAKYGSRNY LVQARVEEGS YLCECCKMDK DDILCCHILK  360
VFTHIGVDVN RKGTGYEQPD EMPPQSKKQI RERNMIYDFR KLAKFASGSD PAQAIVYKHM  420
RAARTEIGHL NMSKKKKKPT AATGPSDDGN PRGPPPPPGN NQGAHYPGDR DGPTAPLEAA  480
SPAQSSDDFV PRDPPRSSTK GRAKSRRYKS ALELHPKKKN KCSQCQSTEH TAGVCPLRLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208KKKKRK
2203209KKKKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR7W5Z20.0R7W5Z2_AEGTA; Protein FAR-RED ELONGATED HYPOCOTYL 3
STRINGEMT165920.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-13far-red elongated hypocotyls 3