PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16496
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 973aa    MW: 107139 Da    PI: 8.4805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16496genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.4e-17677726255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + +h++ E+rRR++iN++f+ Lr+llP+     ++K +Ka+ L +++eYI+ Lq
  EMT16496 677 KSKHSATEQRRRSKINDRFQILRDLLPHT----DQKRDKATFLLEVIEYIRFLQ 726
               578*************************8....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.109.9E-5191249IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.487199229IPR002885Pentatricopeptide repeat
PfamPF015350.13203229IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.523232266IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.9E-5234267IPR002885Pentatricopeptide repeat
PfamPF015354.1E-4234261IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.161335369IPR002885Pentatricopeptide repeat
PfamPF130412.2E-9335384IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.5E-6338363IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.971372406IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.561407437IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.9E-5410483IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007560.0012412436IPR002885Pentatricopeptide repeat
PfamPF015350.015412436IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.244440474IPR002885Pentatricopeptide repeat
PfamPF130415.5E-12440486IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-7442475IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.358475510IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.533511541IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.9E-5553596IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.015579613IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.102.3E-23674747IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-18675750IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.482675725IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-14677726IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-15677730No hitNo description
SMARTSM003538.5E-13681731IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MATATASSLA SATCLRPFLL ADCRTRSFDV SYFFCLGGAR LAFAGGGRGH HHQWTLPFAG  60
AGQAATAYRK HPSERKRRGG GGFMDSGSRS SGGAGFDDDD GLAARREVSS SLQVPPSIPP  120
HVLLFSSDVS PNTHPHLLHA ASRLAFGLRL TSLALRHYLA LRAGHPAFLP PAPAIGDVLK  180
SVPGRAAHAH ALRLTDGDTR FLHNSLIAMY FSCGDAGRAR RVFEGMRDCD RDVVSWTSLI  240
SGLVQSGSPL QALRLFAAMM CCHVRPDFVL LVTVLKAYME LDDLPGAKSA HSLVVKGGFD  300
YEQDVVTTLT AMYAKFGCIV AARALFDRIP PPRVNVILWN AMISGYSKNG LAGEAVHLFK  360
QMQVFARSMS PDSVTLRSVI MACAQLGSTE LAVWMEDYVR RSECREDVLV NTALIDMYAK  420
SGSIAHARRV FEQMRAHERD VVVWSALISG YGVHGHLAEA IGLFEDMKLA GVKPNDVTFL  480
GLLSACNHAG AVEKGWFYFH SMRPDHKIEP RHQHYACVVD LLARAGQLDR AYRFILDMPT  540
KPEMSVWGAL LHGCKMHEHS NMAMAERAAQ HIFELEQSNA GHYVQLANMY ASAGMWSHVA  600
GVRVTMRERG VTKATGCSSI EVDGKMHNFH AWDHLHPRAA EIFALLCLLS QKLAVRVDAK  660
GGSCSGSGTD QLPNTPKSKH SATEQRRRSK INDRFQILRD LLPHTDQKRD KATFLLEVIE  720
YIRFLQEKAQ KYEASFPEWN QENAKLLPWS NMYFRSSWKN AQSKGQIAED ALPDPSQFIR  780
NGASPGFNIT GKLDDNHTAA ISGAPDQAET DHMANNVSPQ SQPQWADPSG VDDCAVNSDV  840
LNNPQLMIDE GTISVSSQYS QEFIEHIVKS IFRLYQTKYI DTIRLLLTHN RLLNTLTHAL  900
QSSGIDLSQA NISVQINLGK RAVKRPIAGQ SSNFKEHTDL GPTNNMMGHQ QTMVGNAAEE  960
LPHATKRYKP GNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-5618454517330PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754870.0AK375487.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3095K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLR7W6470.0R7W647_AEGTA; Pentatricopeptide repeat-containing protein
STRINGEMT164960.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-49BES1-interacting Myc-like protein 2