PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16396
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 88aa    MW: 9874.97 Da    PI: 6.5268
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16396genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-081764347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W++ E + + +a + +G      W+++a+ mg ++++++++ ++q +
         EMT16396 17 EWSKKENKMFEEALAYYGVSapnLWEKVASAMGGTKSAEEVRRHFQLL 64
                     7*****************99**9**********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9571065IPR017877Myb-like domain
SMARTSM007173.7E-71467IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-111672IPR009057Homeodomain-like
CDDcd001671.28E-51765No hitNo description
PfamPF002491.1E-71763IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-51771IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSGSPSRST SPSSDSEWSK KENKMFEEAL AYYGVSAPNL WEKVASAMGG TKSAEEVRRH  60
FQLLVDDVDS IEHGRIPFPK YKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-19985277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612035e-79AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176377.16e-60protein RADIALIS-like 3
SwissprotF4JVB82e-23RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3B6A1701e-58A0A3B6A170_WHEAT; Uncharacterized protein
TrEMBLA0A452ZY521e-58A0A452ZY52_AEGTS; Uncharacterized protein
TrEMBLN1QZC01e-58N1QZC0_AEGTA; Uncharacterized protein
STRINGEMT163962e-59(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-24RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]