PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 476aa MW: 51834 Da PI: 8.5555 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.1 | 2.1e-29 | 238 | 297 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg Hnh+ EMT16363 238 MNDGCQWRKYGQKISKGNPCPRAYYRCTIAtGCPVRKQVQRCKEDMSILITTYEGAHNHH 297 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-31 | 224 | 297 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-26 | 231 | 298 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.577 | 233 | 299 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-35 | 238 | 298 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 239 | 297 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MIKGDQSQLG GHEERLKDQI RDDHRASDHN FFKFLQNQSS TKKEDQEDKI ASTRAEMGEV 60 RKENERLKMM LSRMVEDHRS LQKQLDALHQ QGRGKNLAVG SAAHTSPSNN VKEPGFVSLR 120 LGMSAGTSRQ NMGEKIKRGT NNPEGRDMSL ELSPGCKAVG AAGQSETKVR RDVLMLSPGG 180 SSEEEAVETT TTSAAASKMV KNPRSTGSGV ETEDEVAQQP LPKKARVSVR ARCDTPTMND 240 GCQWRKYGQK ISKGNPCPRA YYRCTIATGC PVRKQVQRCK EDMSILITTY EGAHNHHLSA 300 SATAMASTTS AAVSMLMSGS STSLGFPSTA SSLHDLRFGL PTATIVNPSN QLTGQPFFLP 360 VAGDASISAT PSYSTITLDL TSQATSQHAF SLSNSNRFSS SFIDSHGHNN NTSRVLAGAS 420 VTVVFNGSHP ERFSKWQDEV GAVVATVKLH KCYCFDISHI KSMEHINWLD EGYELC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-20 | 238 | 300 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-20 | 238 | 300 | 17 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191156.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | N1R3K5 | 0.0 | N1R3K5_AEGTA; Putative WRKY transcription factor 72 | ||||
STRING | EMT16363 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 3e-46 | WRKY DNA-binding protein 72 |