PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT16186

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 274aa MW: 30609.7 Da PI: 8.1282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT16186	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.4e-06	118	193	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC.............................TTS-..STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas..........................kapskK..lsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ ++s + +K +i++ A YI++L EMT16186 118 HMMRERQRREKLSQSYADLYAMVSSRSkvllrpsapavphsislvlechvlseR--VMPlqQDKNSIVQSAAVYIHEL 193 889********************888***999999999999999999652..3332378888999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.61	113	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-9	113	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-8	117	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-9	173	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MQMDSYYFHD DAHFFAGCGV PGSPDLPFAD LIASLSEPLP EVASQSAFRE YRGVGLELPG 60 TARGGTGNGI NIHRRMMGVL GRMVPVTEEE ERPQQQHQQQ QQQQQAAGAV ESSRGFRHMM 120 RERQRREKLS QSYADLYAMV SSRSKVLLRP SAPAVPHSIS LVLECHVLSE RVMPLQQDKN 180 SIVQSAAVYI HELKVAKEQL QRRNDELKAK ILGHDAQQQC VKVQFEVDEP SSSVDSMIGA 240 LRRLKSMNVK TRGIHSTLSG QRLTTEMNVE TTVS

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365903	1e-142	AK365903.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038M22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179773.1	0.0	transcription factor BHLH148 isoform X1
Refseq	XP_020179774.1	0.0	transcription factor BHLH148 isoform X1
Swissprot	Q75KV9	3e-83	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	N1QZ46	0.0	N1QZ46_AEGTA; Transcription factor bHLH92
STRING	EMT16186	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-20	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]