PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT15483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 410aa MW: 44036.3 Da PI: 4.4478 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g EMT15483 52 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 101 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.52E-30 | 51 | 108 | No hit | No description |
SMART | SM00380 | 1.5E-33 | 52 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 52 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-19 | 52 | 109 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-27 | 52 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 52 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-8 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MAMKRKLSPT EADLDSDDHH KPDTSSITTA TRPEPWAATV GAVATAQPAR KRFVGVRQRP 60 SGRWVAEIKD TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP RAAAPAATSD 120 GHGGAGLAEN HGHLHHHTPP PSALPSKVTN LLLLRLKRAR SISDEHISAS ATAQEALGQQ 180 QQEQEEYGAG SFHVDDFLSY DSNVDEHGVV KYEEDSHCSR DAEDDEEDVS VEEEEAPLDF 240 GFMDTHPSPP GDVGDAGLFS PFEMMAAEIG GAVEAEAEAP EYGGGENENS AAIHEVMKRM 300 TYERKISASL YALSGVSECL RLRLGDVGHG LALSGLRDAC MKKRQEQNQE AVVDCVEGGH 360 EESSSSNSSS SSEVASCSPE AGISSPNADA VDSDVVMWSS LDLAPICFMS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 1e-76 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177393.1 | 0.0 | uncharacterized protein LOC109762920 | ||||
TrEMBL | A0A3B6JEP7 | 0.0 | A0A3B6JEP7_WHEAT; Uncharacterized protein | ||||
TrEMBL | R7W5K6 | 0.0 | R7W5K6_AEGTA; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | EMT15483 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-22 | related to AP2 11 |