PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15473
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 148aa    MW: 16356.6 Da    PI: 9.9167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15473genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.53.4e-203583691
              EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
        B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
              l + d  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F+++++ + +
  EMT15473  3 LNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRSSSGNNQ 58
              77899*******************************************76654444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.338167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-23372IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-17360IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-18464IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-15757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MLLNFDDAAG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG LHAGDAVGFY RSSSGNNQLF  60
IECKLRSKTT TTTTTFVNAA AAASPAPVMR TVRLFGVDLL AAPAPSHAPE HEDCSMVPKT  120
YKRSMDTSAA PTPAHAVWKK QCIDFALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2816752118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093100.0BT009310.1 Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159694.11e-106AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ6L4H45e-48Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A452ZS211e-105A0A452ZS21_AEGTS; Uncharacterized protein
TrEMBLN1R3A01e-107N1R3A0_AEGTA; AP2/ERF and B3 domain-containing protein
STRINGEMT154731e-108(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2906334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.26e-30related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]