PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT15265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 386aa MW: 42716 Da PI: 8.2805 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2.2e-31 | 87 | 143 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+ EMT15265 87 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPSCPVKKKVEHAE-DGHISEIIYKGKHNHQ 143 8**************************************99.***************8 PP | |||||||
2 | WRKY | 41.8 | 2.1e-13 | 243 | 267 | 1 | 25 |
---SS-EEEEEEE--TT-SS-EEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYY 25 ldDgy+WrKYGqK+vkg+++pr+Y+ EMT15265 243 LDDGYRWRKYGQKVVKGNPHPRKYF 267 59**********************8 PP | |||||||
3 | WRKY | 55.2 | 1.4e-17 | 295 | 332 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 sYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe EMT15265 295 WSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 332 59***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-28 | 83 | 145 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-25 | 85 | 145 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-33 | 86 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.997 | 87 | 145 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-24 | 87 | 143 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-31 | 229 | 263 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-11 | 235 | 267 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.133 | 238 | 334 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-34 | 243 | 333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-10 | 244 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-11 | 293 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-13 | 294 | 334 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-31 | 295 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MSHQQALAQV TAQASHSPHR MFDHTEQPSF SAAATSSGAL QNMSSAANVA EMSEMATTIS 60 NNEHAAFQSA EASHRYQVPA PVDKPADDGY NWRKYGQKVV KGSDCPRSYY KCTHPSCPVK 120 KKVEHAEDGH ISEIIYKGKH NHQRPPNKRA KDGSSSAAEQ NEQSNDTASG LSGVRRDQEA 180 VYGMSEQLSG LSDGDDKDDG ESRPNEVDDR ENDCKRRNIQ ISSQKALTES KIIVQTTSEV 240 DLLDDGYRWR KYGQKVVKGN PHPRKYFPVY ALPVDLIGPF GHRLAPYSVY MQCMWSYYKC 300 TFAGCNVRKH IERASSDPKA VITTYEGKHN HEPPVGRGSN QNGGNSNRSQ QKGPNSMSSN 360 QASHTGTDLG NIKQGQIGVL QFKREE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-33 | 87 | 334 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-33 | 87 | 334 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX216840 | 0.0 | JX216840.1 Hordeum vulgare WRKY61 protein (WRKY61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168255.1 | 0.0 | probable WRKY transcription factor 4 | ||||
TrEMBL | N1R081 | 0.0 | N1R081_AEGTA; Putative WRKY transcription factor 3 | ||||
STRING | EMT15265 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 5e-92 | WRKY DNA-binding protein 3 |