PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT15150
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 345aa    MW: 37803.8 Da    PI: 6.1259
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT15150genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-131755745
              HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              s r   + +R++g++KKA  L +LCd++ +v++++++g 
  EMT15150 17 STRRSRYKQRLKGLMKKAGDLATLCDVDTCVVVYGEDGA 55
              55666899*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-8162IPR002100Transcription factor, MADS-box
CDDcd002661.02E-19587No hitNo description
SuperFamilySSF554559.42E-17697IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.32763IPR002100Transcription factor, MADS-box
PfamPF003191.1E-111554IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRLPKKVTL GYVRHDSTRR SRYKQRLKGL MKKAGDLATL CDVDTCVVVY GEDGAAPEVF  60
PSSDKAVGIL NGFKSMPELG HCKKTMDQEG LLTERIAKLQ EQVDKSRREC QDRETRYLLQ  120
QIMDGNLPGH VGLSVEQLAR VGYKVEEMIK TMGERMGKTH SQAPPPAPCV TTGSIDMGSP  180
ALHQAPEQQQ EGTLVGGYAG GHDGAGFTGG DTVMQMQSFN LEFGSSHFPP MYQAPPPAPW  240
VTTGSVDMGS TALHQAPVQR QEGTLLSSGG DLGTLVYGGY AGGHEGAGFT VGDTMMQMQS  300
FNLEFDWSRF PPIFFWTAHA CLDNDLRLYY IATEWHTVVP IDQYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174675.11e-87agamous-like MADS-box protein AGL80
TrEMBLN1R3660.0N1R366_AEGTA; Agamous-like MADS-box protein AGL80
STRINGEMT151500.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-24AGAMOUS-like 80