PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT14974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20832.4 Da PI: 10.4693 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.5 | 2e-14 | 11 | 54 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 i n+s r t+ kR + ++KKA+E+ +LC+a+++v+++++ ++ EMT14974 11 IRNDSTRLNTLKKRTKNLMKKASEVATLCNAKACVLVYGEGTTV 54 89*************************************97665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.306 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.6E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.00E-18 | 2 | 61 | No hit | No description |
PRINTS | PR00404 | 4.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-18 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-12 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MARKKVALRY IRNDSTRLNT LKKRTKNLMK KASEVATLCN AKACVLVYGE GTTVPEVFPS 60 HAEAVAILNQ FKSIPEVPQL KKTMDQETIL SKRLVQLRHQ VEKIRRERED REAMILLHKA 120 MVSGHLPGNI EELTTMAWKL ELILKSLGER ITKRSGQPPV YQAQAPYVTG GMDMGSSMYQ 180 ALQQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166803.1 | 1e-135 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | N1QZX2 | 1e-134 | N1QZX2_AEGTA; Agamous-like MADS-box protein AGL80 | ||||
STRING | EMT14974 | 1e-134 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-24 | AGAMOUS-like 80 |