 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT14910 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
Whirly |
| Protein Properties |
Length: 219aa MW: 25027.7 Da PI: 9.8448 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT14910 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 36 | 1.3e-11 | 26 | 60 | 22 | 56 |
Whirly 22 dsgnlklkraGglllelanataerkydWekkqsfa 56
+sg+ k+ ++G++ll++a+a+++r+ydW +kq
EMT14910 26 QSGAYKVAKEGFVLLQFAPAVGPRQYDWTRKQLPK 60
589****************************9654 PP
|
| 2 | Whirly | 112.4 | 3.3e-35 | 96 | 182 | 53 | 139 |
Whirly 53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
++f+ls+ e+++l+ l+ +sceffhdp+++ s+eGkvrk+lkveP pdG G f+nlsv+n l++++e++++P++k+e+av+ s ++
EMT14910 96 DVFSLSVWEMGTLLTLGLTDSCEFFHDPFKGRSDEGKVRKVLKVEPTPDGNGRFFNLSVQNRLLNVDENIYIPITKGEYAVIVSTFN 182
58********************************************************************************99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MGFSIDGPGR GLGFLPRALL GPAYGQSGAY KVAKEGFVLL QFAPAVGPRQ YDWTRKQLPK 60
TSVYARLNSM VWFRQKEKKT YITLKNEFQA KIYIVDVFSL SVWEMGTLLT LGLTDSCEFF 120
HDPFKGRSDE GKVRKVLKVE PTPDGNGRFF NLSVQNRLLN VDENIYIPIT KGEYAVIVST 180
FNYIIPHIMG WSTFTNSIKP EESQPYNRPQ SSPELEWRR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 2e-68 | 1 | 217 | 40 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 2e-68 | 1 | 217 | 40 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 2e-68 | 1 | 217 | 40 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 2e-68 | 1 | 217 | 40 | 218 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353795 | 1e-171 | AK353795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002M22. |
| GenBank | AK365452 | 1e-171 | AK365452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E15. |
