 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
EMT14529 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family |
C3H |
Protein Properties |
Length: 450aa MW: 49904.6 Da PI: 7.328 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EMT14529 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 37.6 | 3.6e-12 | 309 | 334 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
EMT14529 309 YQPDICKDYKETGYCGYGDSCKFMHD 334
66789********************7 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 2.62E-9 | 306 | 339 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.7E-10 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-12 | 309 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.6E-13 | 376 | 427 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.81E-13 | 385 | 428 | No hit | No description |
Pfam | PF13920 | 1.7E-8 | 385 | 426 | No hit | No description |
CDD | cd00162 | 3.96E-9 | 386 | 427 | No hit | No description |
PROSITE profile | PS50089 | 10.689 | 386 | 424 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 7.5E-5 | 386 | 423 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 401 | 410 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 450 aa
Download sequence Send
to blast |
MAEPRTRAST IVADRVDAAC PEHYKALYYY AAKQLGRRSL TSTTGQVPFI VDVNAVPPQL 60 DRTSSVEQLG ARMLFIGMPK AGEPAYDDAN MKMFEMIHDE GEEEDHRNLQ KVTNYLVLPP 120 NPTPMSDGGG GEPGAGGSAP VCNFVRKPPK NIRKRPAASV GSDGEEGSGG DDSGAIAAAR 180 SKKPPSTTSK LFFSSADNSH EPRRFQFESS RTIQSSTDNR ATATLETETA YDRDARAIRE 240 RQLKQAEESL KKNPSASSSS GELYKGIHGY TDHKAGFRRE HTVSGEKAGG AHGPLRASAH 300 IRLSTRFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQLEREWDE AEKARKRRIA 360 MRELDGSDAE AEEGDSDDEE ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC 420 FVCNKPTLGI FNAAQEIRKK IAQDKKQQDL
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5z56_M | 1e-62 | 141 | 441 | 14 | 317 | RING finger protein 113A |
5z58_M | 1e-62 | 141 | 441 | 14 | 317 | RING finger protein 113A |
6ff4_t | 1e-62 | 141 | 441 | 14 | 317 | RING finger protein 113A |
6ff7_t | 1e-62 | 141 | 441 | 14 | 317 | RING finger protein 113A |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK361400 | 0.0 | AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11. |
GenBank | AK371103 | 0.0 | AK371103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125B03. |