PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT14529

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C3H

Protein Properties

Length: 450aa MW: 49904.6 Da PI: 7.328

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT14529	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.6	3.6e-12	309	334	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ EMT14529 309 YQPDICKDYKETGYCGYGDSCKFMHD 334 66789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.62E-9	306	339	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-7	308	335	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.878	308	336	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.7E-10	309	334	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-12	309	339	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	1.6E-13	376	427	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	3.81E-13	385	428	No hit	No description
Pfam	PF13920	1.7E-8	385	426	No hit	No description
CDD	cd00162	3.96E-9	386	427	No hit	No description
PROSITE profile	PS50089	10.689	386	424	IPR001841	Zinc finger, RING-type
SMART	SM00184	7.5E-5	386	423	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	401	410	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MAEPRTRAST IVADRVDAAC PEHYKALYYY AAKQLGRRSL TSTTGQVPFI VDVNAVPPQL 60 DRTSSVEQLG ARMLFIGMPK AGEPAYDDAN MKMFEMIHDE GEEEDHRNLQ KVTNYLVLPP 120 NPTPMSDGGG GEPGAGGSAP VCNFVRKPPK NIRKRPAASV GSDGEEGSGG DDSGAIAAAR 180 SKKPPSTTSK LFFSSADNSH EPRRFQFESS RTIQSSTDNR ATATLETETA YDRDARAIRE 240 RQLKQAEESL KKNPSASSSS GELYKGIHGY TDHKAGFRRE HTVSGEKAGG AHGPLRASAH 300 IRLSTRFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQLEREWDE AEKARKRRIA 360 MRELDGSDAE AEEGDSDDEE ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC 420 FVCNKPTLGI FNAAQEIRKK IAQDKKQQDL

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MAEPRTRAST IVADRVDAAC PEHYKALYYY AAKQLGRRSL TSTTGQVPFI VDVNAVPPQL  60
DRTSSVEQLG ARMLFIGMPK AGEPAYDDAN MKMFEMIHDE GEEEDHRNLQ KVTNYLVLPP  120
NPTPMSDGGG GEPGAGGSAP VCNFVRKPPK NIRKRPAASV GSDGEEGSGG DDSGAIAAAR  180
SKKPPSTTSK LFFSSADNSH EPRRFQFESS RTIQSSTDNR ATATLETETA YDRDARAIRE  240
RQLKQAEESL KKNPSASSSS GELYKGIHGY TDHKAGFRRE HTVSGEKAGG AHGPLRASAH  300
IRLSTRFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQLEREWDE AEKARKRRIA  360
MRELDGSDAE AEEGDSDDEE ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC  420
FVCNKPTLGI FNAAQEIRKK IAQDKKQQDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	1e-62	141	441	14	317	RING finger protein 113A
5z58_M	1e-62	141	441	14	317	RING finger protein 113A
6ff4_t	1e-62	141	441	14	317	RING finger protein 113A
6ff7_t	1e-62	141	441	14	317	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361400	0.0	AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11.
GenBank	AK371103	0.0	AK371103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125B03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156391.1	0.0	zinc finger CCCH domain-containing protein 15
Swissprot	Q6K4V3	1e-161	C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBL	R7W9H9	0.0	R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRING	EMT14529	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8071	36	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-129	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]