PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT14307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 28460.6 Da PI: 7.1687 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.2 | 7.3e-14 | 103 | 182 | 8 | 87 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 s +l++++l ++ +f +hg+ ++++++l++ +g+sW v l+++ + g+ +++ GW +F+ +n L egD++ F+ + + EMT14307 103 SPMLRKCNLNVSVDFQLAHGYAERSKVELRM---RGKSWPVHLKHNPNTGGrprAWFRYGWHQFCVDNSLGEGDTCFFRAICQ 182 789999*********99**999888766664...67*******99555555567************************97754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-7 | 1 | 42 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.32 | 1 | 40 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.65E-8 | 1 | 46 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.39E-7 | 1 | 38 | No hit | No description |
PROSITE profile | PS50863 | 9.375 | 96 | 199 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0017 | 99 | 188 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.86E-12 | 103 | 178 | No hit | No description |
Pfam | PF02362 | 3.3E-11 | 103 | 180 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-19 | 107 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-13 | 107 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MYLGRGWEQF TRAHDLRLRY FLVFTFDGDA VLTLKVFDVS MCQRHYKHDD DMSTVSSSDG 60 DSGNNNSSVG DSGSNNGSVG DSGSNSSSTA EMDAENGPAS QFSPMLRKCN LNVSVDFQLA 120 HGYAERSKVE LRMRGKSWPV HLKHNPNTGG RPRAWFRYGW HQFCVDNSLG EGDTCFFRAI 180 CQGSASTGGE DHLTQGGGEE AGRQIPGLRR GPPLHASAWL AGVTSFVAMH GHGFASSVPH 240 LLSTQLSSPV IRVLCMYHAV Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374948 | 1e-109 | AK374948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168607.1 | 1e-87 | B3 domain-containing protein Os03g0212300-like | ||||
TrEMBL | N1QWS7 | 0.0 | N1QWS7_AEGTA; B3 domain-containing protein | ||||
STRING | EMT14307 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-08 | B3 family protein |