PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14257
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 273aa    MW: 29272.7 Da    PI: 5.0586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14257genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09100145454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               +h e+Er+RR+++N +f  Lr  +P+       +++  + L  A  YI +L
  EMT14257 100 SHVEAERQRREKLNRRFCDLRAGVPTV-----SRMDRTSLLADAAAYIAEL 145
               799***********************5.....49**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.3796145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1399161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-13100159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-8100150No hitNo description
PfamPF000101.5E-6100145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-7102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDELLSPCSS FLPPPPPPQL ATADENHHEV LEFTSCEVPE QWLLGDVVAA AQSEEGDYLG  60
PEGSSSLSPD TELPPASLQA SAKKRRGRKP GPRPEGPTPS HVEAERQRRE KLNRRFCDLR  120
AGVPTVSRMD RTSLLADAAA YIAELRSRVA QLEDEGRQAA ASRWDWEVSN ASASSSRSGH  180
AGSMHHPACD DVVEVRMVGK DAAAVRVTSA GGAPHAPARL MGALRSLELQ VQHACVNCVE  240
GVTVQDVVVD VPAALQDDGV LQCALLQRLR DNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-17100158866Transcription factor MYC2
5gnj_B9e-17100158866Transcription factor MYC2
5gnj_E9e-17100158866Transcription factor MYC2
5gnj_F9e-17100158866Transcription factor MYC2
5gnj_G9e-17100158866Transcription factor MYC2
5gnj_I9e-17100158866Transcription factor MYC2
5gnj_M9e-17100158866Transcription factor MYC2
5gnj_N9e-17100158866Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065253e-55AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072543e-55AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149653e-55AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-55CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181316.10.0transcription factor MYC2-like
RefseqXP_020194709.10.0transcription factor MYC2-like
TrEMBLN1R2V80.0N1R2V8_AEGTA; Uncharacterized protein
STRINGEMT142570.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-24bHLH family protein