PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13761
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 461aa    MW: 50161.4 Da    PI: 6.7969
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13761genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.69.2e-142103433128
       NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk...sgyWk.atgkdkevlsk. 95 
               + f+F+Ptd  +v  yL +++ g +  +  e+++ + d +++ PwdL +k++++++ + +fF + ++    g r +r++     g+W+ + g+  +v+   
  EMT13761 210 AAFKFDPTDAGIVASYLLPRAVGLDepHGREHAVIDDDPMSIPPWDLMEKHNHGTSdQAFFFGPPRN----GGRVTRVVPgkgGGTWQgQNGRVGTVTLFc 306
               679***************9988877544444568888**********86666655536677777644....67777764333499**96678877777666 PP

       NAM  96 .....kgel.vglkktLvfykgrapkgektdWvmheyrl 128
                    ++ +    +  L++   ra +   + Wvm ey++
  EMT13761 307 dgaraGEVDiSYRRYDLTYK--RAGDKAPSGWVMSEYQI 343
               66655333324455667776..56666689*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020411.9E-851148IPR000526Auxin-binding protein
Gene3DG3DSA:2.60.120.105.2E-393146IPR014710RmlC-like jelly roll fold
SuperFamilySSF511824.46E-256138IPR011051RmlC-like cupin domain
PRINTSPR006555.3E-631333IPR000526Auxin-binding protein
PRINTSPR006555.3E-633660IPR000526Auxin-binding protein
PRINTSPR006555.3E-636679IPR000526Auxin-binding protein
PRINTSPR006555.3E-637994IPR000526Auxin-binding protein
PRINTSPR006555.3E-63100122IPR000526Auxin-binding protein
PRINTSPR006555.3E-63122141IPR000526Auxin-binding protein
PROSITE profilePS5100521.739208359IPR003441NAC domain
SuperFamilySSF1019413.92E-19208349IPR003441NAC domain
PfamPF023652.1E-10211343IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000911Biological Processcytokinesis by cell plate formation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009826Biological Processunidimensional cell growth
GO:0032877Biological Processpositive regulation of DNA endoreduplication
GO:0045793Biological Processpositive regulation of cell size
GO:0051781Biological Processpositive regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004872Molecular Functionreceptor activity
GO:0010011Molecular Functionauxin binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MHQSNYGIGG FSHITVAGAL AHGMKEVEVW LQTISAGQRT PIHRHSCEEV FVVLKGRGTL  60
LLGSTSLPYP GTPQEIPVFQ NSTFTVPINY PHQVWNSDEH EDLQVLVIIS RPPVKIFLYE  120
DWSMPHTAAK LKFPFVWDED CLDAPKDELN LGSQVVVESA IRSAHISCAP LPNHTGTGTG  180
TKEPFVCGAE QSGAEGMEAS RFGFGRDMAA AFKFDPTDAG IVASYLLPRA VGLDEPHGRE  240
HAVIDDDPMS IPPWDLMEKH NHGTSDQAFF FGPPRNGGRV TRVVPGKGGG TWQGQNGRVG  300
TVTLFCDGAR AGEVDISYRR YDLTYKRAGD KAPSGWVMSE YQITSPPLLS TVLTRIGLIV  360
AAREQRKRQP ADPEAFAQQG PHKVLAVAAA ATAAEHQRVS PAPVQPGPDP QADDGALYHG  420
DTSVTGVGEN GGHYTVPLLL NGQEYYKDKS RVKRKRRRYG A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lr5_A3e-88114915163Auxin binding protein 1
1lr5_B3e-88114915163Auxin binding protein 1
1lr5_C3e-88114915163Auxin binding protein 1
1lr5_D3e-88114915163Auxin binding protein 1
1lrh_A3e-88114915163auxin-binding protein 1
1lrh_B3e-88114915163auxin-binding protein 1
1lrh_C3e-88114915163auxin-binding protein 1
1lrh_D3e-88114915163auxin-binding protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452457KRKRRR
2453457RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2433740.0KU243374.1 Triticum aestivum cultivar Lunxuan987 auxin-binding protein (ABP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172436.10.0uncharacterized protein LOC109757996
TrEMBLR7W2T80.0R7W2T8_AEGTA; Auxin-binding protein 1
STRINGEMT137610.0(Aegilops tauschii)