PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT13532

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 244aa MW: 27492.3 Da PI: 6.9413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT13532	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.4e-14	79	131	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR ++N+ +++Lr+l+P+a + kKls +++ ++ +YI +Lq EMT13532 79 KKLNHNAYERDRRTQLNQLYSTLRSLIPNA--DHTKKLSIPTTVCQVLDYIPKLQ 131 6789***********************7..35666*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.29E-17	76	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.43E-10	78	135	No hit	No description
PROSITE profile	PS50888	13.598	78	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-11	79	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-13	79	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-8	84	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDLQQLMEHQ LFDDGAVPSC MISPLEADNG FTDELPSLQL PDLDLDFDIH EFSAPATAPA 60 KAATSGGSGL VGSGSGSHKK LNHNAYERDR RTQLNQLYST LRSLIPNADH TKKLSIPTTV 120 CQVLDYIPKL QKQVEDLEKK KQELTRAKCR ERLQRVKDNT CRIVSATPLD GNEIMVQVRL 180 LSNMAASLPL SKCINVFENE GLHLISSSTF STEVNRTFYS FHFEMMFAKR QQENVKHFYK 240 NLGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250\|UniProtKB:Q0JFZ0}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165798.1	1e-179	transcription factor ORG2-like
Swissprot	A2WZ60	4e-59	IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBL	R7W200	0.0	R7W200_AEGTA; Transcription factor ORG2
STRING	EMT13532	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3280	34	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-29	bHLH family protein