PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13097
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42199 Da    PI: 4.4706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13097genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.52e-141359349
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              i n+  r  tf kRr g++K A  +S L+ a+vav++  ++gk++ +
  EMT13097 13 IHNDKDRDLTFYKRRSGLFKRATDISALTRARVAVVLETNNGKMHSF 59
              89*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-8162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.339363IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-9525IPR002100Transcription factor, MADS-box
CDDcd001201.91E-11662No hitNo description
SuperFamilySSF554556.54E-15672IPR002100Transcription factor, MADS-box
PfamPF003192.3E-151359IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPRKERRSGV AYIHNDKDRD LTFYKRRSGL FKRATDISAL TRARVAVVLE TNNGKMHSFG  60
TPLADPIFDA FLFGAPPTVP SVNEATTARI GSLQNELAQL DMENMTEEAR NQLSILHMKS  120
IQEENPSMVA NLIFTKEQDL GLEDLNKLFS ELSRVQKDIR CQLPPLHGRE AKTSGTCVAQ  180
DLQLPSVPLT DHLGTTHSLM QSSWPHNLSQ LQPPADPLPS QPEQTSAPLF PMQAPQMFDF  240
APPSLAPHLA SHVQPIPNQV HEQTQLEELH VQNYESPCNI VQPQQSDANH DSTLGQNLEA  300
SPLLGYSSGN AFSIDDPFNS EQWDYSLSDQ SFYNSFLGID DYLGSSGTDL GQSAMVNGGW  360
FDVPPSSTGQ DIDGLIDYGE LL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174736.10.0MADS-box transcription factor 8-like
TrEMBLN1QVQ80.0N1QVQ8_AEGTA; MADS-box transcription factor 8
STRINGEMT130970.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.32e-10MIKC_MADS family protein