PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13095
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 368aa    MW: 40667.5 Da    PI: 4.8744
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13095genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121359349
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              i n+  r  tf kRr g++K    +S L+ a+vav++  ++gk++ +
  EMT13095 13 IHNDKERDHTFYKRRSGLFKRVTDISALTRARVAVVLETNNGKMHSF 59
              89*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-7162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.105363IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-14672IPR002100Transcription factor, MADS-box
PfamPF003192.0E-141359IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPRKERRSGV AYIHNDKERD HTFYKRRSGL FKRVTDISAL TRARVAVVLE TNNGKMHSFG  60
TPLADPIVDA FLFGAPLAVP SADEATIARI GSLQNEVAQL DMENMTEEDK NQLSILRMKN  120
IQEENPGMVA NLIFMKEKDL NLEDLNKVFS ELSRVQKDIR FQQPPLPGRE DKTCGTSVAQ  180
DLLLPSVLPV DHLGTTHSLM QSSWPHNLSQ LQLPSKPLPS QPEQTSAPLF PMQAPQMLHS  240
APPSLAPHLA SHVQPIQNQV HEQTPAEELH VQNYESPCNI VQPQQDDANH DSTSGQNLEA  300
SPLLGYSSAN DFSIDGPFNT EQWGYALSDQ SYYNSFLGMD AYLGSSATDL GQSSMVNGGW  360
VDVPPSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174719.10.0MADS-box transcription factor 22-like
TrEMBLN1QV820.0N1QV82_AEGTA; Pheromone receptor transcription activator
STRINGEMT130950.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-09AGAMOUS-like 62