PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT12832

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

M-type_MADS

Protein Properties

Length: 194aa MW: 21506.5 Da PI: 4.9334

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12832	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.6	2.5e-11	13	41	14	42
HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42 s Rr ++KKA EL ++Cd++ +v+++++ EMT12832 13 STRRGSLMKKATELATMCDVKTCVVVYGE 41 67*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0095	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-8	7	41	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.236	13	41	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-8	15	41	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MARKKVTLIA NDSTRRGSLM KKATELATMC DVKTCVVVYG EGLAEPKEAF LTQRIAKLRD 60 QVDRARRECQ DSEIRYLLYN IMHGNHPGLV DLSAEELARV GWKVDELLKS LGERMAKNHV 120 QAPPPAPCVS TDNIDMGSPP LYLASPQEEE VWLDTVSSGG DVGTQVYGGN ASHDTDVDFL 180 ELRLIDTLYP YPSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174675.1	5e-57	agamous-like MADS-box protein AGL80
TrEMBL	N1QV15	1e-142	N1QV15_AEGTA; MADS-box transcription factor PHERES 2
STRING	EMT12832	1e-143	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP363	36	202

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65300.1	6e-12	AGAMOUS-like 38