PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12583
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 182aa    MW: 19824.4 Da    PI: 6.1236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12583genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.91.1e-2828054129
       NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
               +ekew+fF+++ +ky+tg+r+nrat++gyWkatgkdke+++    +  lvg+kktLvfy+grap+g +t  vmheyrle
  EMT12583   2 GEKEWFFFVHKGRKYPTGTRTNRATEKGYWKATGKDKEIFRGkgrDAVLVGMKKTLVFYTGRAPSGGETPGVMHEYRLE 80 
               579*************************************984444445****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.261103IPR003441NAC domain
SuperFamilySSF1019413.53E-322103IPR003441NAC domain
PfamPF023653.3E-12679IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGEKEWFFFV HKGRKYPTGT RTNRATEKGY WKATGKDKEI FRGKGRDAVL VGMKKTLVFY  60
TGRAPSGGET PGVMHEYRLE GELPHRHRLT AKDDWAVCRV INKDLAARNA LQMAPAAGGG  120
MEDPLAFLDD VLNNDDLLNN AELLDNAGLL DNADLPMLMD SPSGADDFAG ASTSPSSAAL  180
PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-28110968171NO APICAL MERISTEM PROTEIN
1ut4_B3e-28110968171NO APICAL MERISTEM PROTEIN
1ut7_A3e-28110968171NO APICAL MERISTEM PROTEIN
1ut7_B3e-28110968171NO APICAL MERISTEM PROTEIN
3swm_A3e-28110971174NAC domain-containing protein 19
3swm_B3e-28110971174NAC domain-containing protein 19
3swm_C3e-28110971174NAC domain-containing protein 19
3swm_D3e-28110971174NAC domain-containing protein 19
3swp_A3e-28110971174NAC domain-containing protein 19
3swp_B3e-28110971174NAC domain-containing protein 19
3swp_C3e-28110971174NAC domain-containing protein 19
3swp_D3e-28110971174NAC domain-containing protein 19
4dul_A3e-28110968171NAC domain-containing protein 19
4dul_B3e-28110968171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108301e-175AJ010830.1 Triticum sp. mRNA for GRAB2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182284.11e-118NAC domain-containing protein 92-like
SwissprotQ9SQQ61e-43NAC46_ARATH; NAC domain-containing protein 46
TrEMBLM8CBU71e-131M8CBU7_AEGTA; Protein CUP-SHAPED COTYLEDON 3
STRINGEMT125831e-131(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4938822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-43NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]