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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT12525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 340aa MW: 37031.5 Da PI: 7.444 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.2e-14 | 246 | 322 | 14 | 90 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 + l +p++f +hg+ +++ +l g+sW+v+l++ +++ r+ ++ GW +F+ +n+L++g+++ F+ g+ ++ EMT12525 246 QYLNVPREFSVAHGYAERK---KVLLRMGGESWTVNLKHahnVRGKARTSFRYGWHQFCVDNHLRVGETCFFRALGQGGG 322 56889********999665...45566799*******9988756666699***********************7665333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-22 | 226 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-15 | 230 | 332 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.9E-5 | 231 | 335 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.87E-13 | 231 | 333 | No hit | No description |
PROSITE profile | PS50863 | 11.519 | 233 | 332 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-11 | 246 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MAAGDVATVF LEMSLGTRLA VSFPAASTTV ADLKRRVSHE HAACFPNYGQ IAVQSVKVEQ 60 GGSWFHLADS MAVRDAFQFH GANETWHLQV DALPHPQHLG QGMATEGHSK DSSAAHSEPS 120 CEMLADQVKV EVGADSEPSC EMLTDQVKVE VGAEEPLSAK GKRSSNGTDP KGSKEAEATS 180 TEQGACERKR LRPRIRVGKT PITKAANSSG SSESEEMDVN TVGVDAPPSQ FVVMLKECHF 240 VTKNGQYLNV PREFSVAHGY AERKKVLLRM GGESWTVNLK HAHNVRGKAR TSFRYGWHQF 300 CVDNHLRVGE TCFFRALGQG GGDRHVLKVE VRRLDGSYAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 193 | RKRLRPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376008 | 8e-78 | AK376008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3112F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186935.1 | 0.0 | uncharacterized protein LOC109772638 | ||||
TrEMBL | M8BFM2 | 0.0 | M8BFM2_AEGTA; B3 domain-containing protein | ||||
STRING | EMT12525 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-07 | B3 family protein |