PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12434
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 629aa    MW: 69745 Da    PI: 8.9923
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12434genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19641352599
               TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               +++++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el+++v+r+
  EMT12434  64 DYSQQ-RPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRLGVRRS 135
               44333.34679************************************************..3489999***9986 PP
2Auxin_resp82.68.9e-281952581882
  Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 r s+seF+v+++k+ k++++++svG Rfkm++e+ed++err++G+++g+ d+dp  W++SkW++L
    EMT12434 195 RLSQSEFIVPYWKFTKSFSQPFSVGLRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 258
                 789***************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-738136IPR003340B3 DNA binding domain
PROSITE profilePS5086311.3542136IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-2357150IPR015300DNA-binding pseudobarrel domain
CDDcd100178.96E-1459134No hitNo description
PfamPF023622.1E-1664135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-2464136IPR015300DNA-binding pseudobarrel domain
PfamPF065071.5E-22195258IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MPRKGGVVVY LPQGHLDHLG DAPAPSPAAV PPHVFCRVVD VTLHADASTD EVYAQLSLLP  60
ENEDYSQQRP SQELVAKDLH GTEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF  120
LRGDDGELRL GVRRSVQLKN GSAFPALYSQ CSNLGTLANV AHAVATKSMF QIFYNPRMLH  180
YMFFLATQVP AEISRLSQSE FIVPYWKFTK SFSQPFSVGL RFKMRYESED AAERRYTGII  240
TGTGDADPMW RGSKWKCLLL FTVNAALALL QYTFLFCTVK VRWDDDGEFR RPNRVSPWEI  300
ELTSSASGSH LAAPTSKRMK PYLPHANPEF TVPHGGGRPD FAESAQLRKV LQGQELLGYR  360
THDGTAVATS QPCEARNLQY IDERGCSNNV SNNVLGGVPS HGVRTPLGIP YHCSGFGESQ  420
RFQKVLQGQE VFRPYRGSLV DARMRNGGFQ QQDGPYASGL LDKWRAQQQH AFGFGPPAPV  480
LPSQPSLSPP SVLMFQQADP KVSRFEFGHG HLDKNVDDPY ARFVSAEGIG RGEQTLSLRP  540
HLGSEVIDSR VAVENKGVAP TNSCKIFGIS LAEKVRARDE MGCDDGGANY PSPTQPLKQQ  600
VPKSLGNSCA TVHEQRPVVG RAIDVQQWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-70130934361Auxin response factor 1
4ldw_A5e-70130934361Auxin response factor 1
4ldw_B5e-70130934361Auxin response factor 1
4ldx_A6e-70130934361Auxin response factor 1
4ldx_B6e-70130934361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761280.0AY376128.1 Triticum aestivum ETTIN-like auxin response factor (ETT1-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158279.10.0auxin response factor 15-like
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLM8C0300.0M8C030_AEGTA; Auxin response factor
STRINGEMT124340.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.13e-88ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]