PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12411
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 358aa    MW: 39424.4 Da    PI: 8.2151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12411genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-1892139148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
         EMT12411  92 KGPWTPEEDIILVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 139
                      79********************************************97 PP
2Myb_DNA-binding46.58.4e-15145190148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
         EMT12411 145 RGNFTQHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 190
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.95887143IPR017930Myb domain
SuperFamilySSF466894.49E-3089186IPR009057Homeodomain-like
SMARTSM007177.4E-1491141IPR001005SANT/Myb domain
PfamPF002493.2E-1692139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2393146IPR009057Homeodomain-like
CDDcd001672.91E-1294139No hitNo description
SMARTSM007173.3E-13144192IPR001005SANT/Myb domain
PROSITE profilePS5129418.953144194IPR017930Myb domain
PfamPF002496.6E-13145190IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-24147194IPR009057Homeodomain-like
CDDcd001671.39E-9147190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDPRKEAAGC TLADFCMHGK HTSTGRRKAP YDMWSHAAEE SRRPASTAGL VSSNKRRPWG  60
EEKLSFRAIL SGGNDDMGRP PCCDNGGASV KKGPWTPEED IILVSYIQQH GPGNWRSVPE  120
NTGLMRCSKS CRLRWTNYLR PGIKRGNFTQ HEEGIIIHLQ ALLGNKWAAI ASYLPQRTDN  180
DIKNYWNTHL KKKVKRLQQQ THPADHFFQH TSTAPNAAEQ TTSMNYYNPS SSNLDSAMQA  240
AMGYPETTTG NVTPATMAVS KLFQSWMPKA PSTDLADYKG MVAMQEFRTD GEAGASVSMT  300
SGDRFSSSDI LTGRGKADMA TTFSVLENWL LDDMVPGQAA MDGLIDISAG CCANPIMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25921944105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108441e-136AK110844.1 Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177196.10.0transcription factor MYB30-like
SwissprotB3VTV71e-81MYB60_VITVI; Transcription factor MYB60
TrEMBLM8BEL80.0M8BEL8_AEGTA; Myb-related protein 306
STRINGEMT124110.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.18e-79myb domain protein 30
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]