 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT12307 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 229aa MW: 26231.9 Da PI: 6.3154 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT12307 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 74.2 | 1.1e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri+nk rq tf kRr g+lKKA+EL vLCda v++fsstg+ly+y+s
EMT12307 9 KRIDNKLSRQATFHKRRRGLLKKAQELAVLCDAHLGVLVFSSTGELYDYCS 59
79***********************************************96 PP
|
| 2 | K-box | 48.2 | 4.6e-17 | 80 | 170 | 7 | 96 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
+ ++ + ++l +++a+Lk+e + L ++R + Ged+ s + +eL Leq+Le +l k+R+ K+++l +q+ee+++k l+e+n +r+
EMT12307 80 QGTNRDDDQKLLEDIARLKRERDHLVASHRMMTGEDMPcSTTKEELADLEQKLECALGKVREMKDKFLNQQLEESRHKVSILEEKNSLMRH 170
3445666799***************************73556679****************************************997765 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.8E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 29.044 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.76E-28 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.81E-36 | 2 | 80 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.8E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.7E-17 | 84 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 11.399 | 87 | 180 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MGRGKVEMKR IDNKLSRQAT FHKRRRGLLK KAQELAVLCD AHLGVLVFSS TGELYDYCSP 60
HTSWSELIQR YKGITNAQLQ GTNRDDDQKL LEDIARLKRE RDHLVASHRM MTGEDMPCST 120
TKEELADLEQ KLECALGKVR EMKDKFLNQQ LEESRHKVSI LEEKNSLMRH VMNHDEQPRA 180
VVEAELMAPM MLPASAFGGF FPEAEEEGLS TSLQLWPQQL PDVQDPSLQ
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF469312 | 3e-48 | KF469312.1 Brachypodium distachyon MADS-box transcription factor 17 mRNA, complete cds. |
