PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT12240

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Dof

Protein Properties

Length: 315aa MW: 33195.7 Da PI: 8.179

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12240	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	108.2	4.2e-34	102	157	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprCds ntkfCy+nnys +qPr+fC+aCrryWt+GGalrnvPvG+ r++ k EMT12240 102 GLNCPRCDSINTKFCYFNNYSFTQPRHFCRACRRYWTRGGALRNVPVGSVYRRHAK 157 579**********************************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	83	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	103	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-29	103	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MIFPPTFLDS SNCWNTNHNQ PQLQEIGNNT HITTIPSPAG HDDGGGDNSN EGGLMATAGA 60 GAGRGDHGGV GAEYGHGGSR NSKPMSMSDR ARLARVPPPV PGLNCPRCDS INTKFCYFNN 120 YSFTQPRHFC RACRRYWTRG GALRNVPVGS VYRRHAKCRD KRKTTSAASE AAATGTSSTT 180 SMTSSSTSCA IGTGTAAPGL QSSMFRRGFA DSFDPASLGL SFPAGLLFAD SGAYAADGCV 240 QQHHDQAHGN RMEQWAAAQI DSFPFMHAMD NQMSGPPTEA MPITMAAMRG MFHFHLGPRS 300 GGGGNGDDGN GASLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194481.1	0.0	dof zinc finger protein DOF5.8-like
TrEMBL	M8BEW5	0.0	M8BEW5_AEGTA; Dof zinc finger protein
STRING	EMT12240	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-33	OBF-binding protein 3