PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12198
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 608aa    MW: 70140 Da    PI: 8.536
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12198genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1478162999
               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               +v+  ++ ++p + +++++++   + +++le+++g s ++ +   k+++  vlt GW++Fv+  +L+  D+++F+++g+s+f   v++f+k
  EMT12198  78 MVFFGQLQIIPEEVVRRFKSE--IPGEIKLETRNGYSHTIVV--AKNQENLVLTVGWRQFVENYDLQMDDSLIFRYKGNSQF--SVMIFDK 162
               5666677799*****999765..6669***************..**********************************9**9..9999986 PP
2B347.82.6e-152293091298
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++ +++pk+f+++++g+   +++++le+++ rs ++ +   k+ g+ v+t GW +Fv+  gL+  D+++F+++g+s+f  +v +f+
  EMT12198 229 FQHEMIVPKEFVQRFKGE--FPREMILETQNRRSCKIGV--AKNNGKLVFTVGWGKFVETFGLEMDDTILFRYNGNSQF--NVIIFD 309
               46779**********988..7789***************..**********************************9999..888887 PP
3B348.81.3e-15478562999
               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               +v    +l++p+ +a+++ g+++    +   ++ gr+W+v ++ +k++++  l++GW++Fv++++Lk gD+++Fkl + +++++ v ++r+
  EMT12198 478 NVAIDFLLTFPRYYAKKYLGEEPH---MY-LQRMGRKWDVWFS-EKNDCK-NLRRGWRQFVEDHKLKIGDICLFKLLSIQSRTMEVYIIRA 562
               455567899*********656443...44.667*********5.445455.49**********************99889999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.25E-1269161No hitNo description
PROSITE profilePS5086311.16670163IPR003340B3 DNA binding domain
PfamPF023621.5E-1277162IPR003340B3 DNA binding domain
SMARTSM010193.0E-680163IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-1781162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1783162IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19215313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20215313IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.73218311IPR003340B3 DNA binding domain
CDDcd100172.37E-14219309No hitNo description
SMARTSM010197.9E-8221311IPR003340B3 DNA binding domain
PfamPF023625.9E-13230309IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-19464563IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18465563IPR015300DNA-binding pseudobarrel domain
CDDcd100171.92E-17468561No hitNo description
SMARTSM010191.7E-11470563IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07470563IPR003340B3 DNA binding domain
PfamPF023626.1E-14474562IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MGTRIGGGVR GAAKRMGTSS ESCKLQDEQY QYYKNLDDEK KYFLVLMLGD FQDAMFCYNC  60
SQFLDGQTIQ LVYKKFNMVF FGQLQIIPEE VVRRFKSEIP GEIKLETRNG YSHTIVVAKN  120
QENLVLTVGW RQFVENYDLQ MDDSLIFRYK GNSQFSVMIF DKLGREKALS VVPAPFLPQV  180
QDRRNEAHEI GYSQKMDVPP ERRKRRTEYH YANLDDEKKY FLVLMLVDFQ HEMIVPKEFV  240
QRFKGEFPRE MILETQNRRS CKIGVAKNNG KLVFTVGWGK FVETFGLEMD DTILFRYNGN  300
SQFNVIIFDE DGCEKASSVF LDPSPPPVQE RCRSATDTVK SSHVHAQAIQ TQSFSIVKGT  360
PMGSPRFKME MGKSCEDNNT VISISSCESS GESCSSEEEY VVHKVPRSDY VRKRKARQLK  420
DANGVTTLSS FKKEQLKDHY ITAHKTKLTS TQKEVVKQKV QSMYTEIPIF VAAMRKYNVA  480
IDFLLTFPRY YAKKYLGEEP HMYLQRMGRK WDVWFSEKND CKNLRRGWRQ FVEDHKLKIG  540
DICLFKLLSI QSRTMEVYII RANDANYQAG LQNDGDREAA FQGGAPTHHA HGVKTEAVEE  600
DVVAPDGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186790.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
SwissprotQ6Z0D91e-47Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLM8CAQ10.0M8CAQ1_AEGTA; Putative B3 domain-containing protein
STRINGEMT121980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]