PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

NF-YC

Protein Properties

Length: 202aa MW: 23148.3 Da PI: 4.7812

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT12058	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	149	9.6e-47	47	149	1	100
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q ie+atd+knh lP +ri+ki+kadedv+misaeaP+l++kace+f le+t+rsw+ ++e krr l++sdiaaav+rtdi+dfl+d EMT12058 47 QLQQFWAEQrseIEQATDIKNHPLPPTRIRKIMKADEDVRMISAEAPALFAKACEMFTLEMTMRSWMVTKEDKRRLLQRSDIAAAVARTDIYDFLLDLFTS 147 89****99999**********************************************************************************9888 PP NF-YC 99 de 100 +e EMT12058 148 EE 149 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.44E-27	20	141	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-30	61	132	IPR009072	Histone-fold
Pfam	PF00808	8.6E-18	70	132	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGDVTPAGSQ PTQLFPGNPA QLSAQEQLMY EQSREYQQQL QQQQQRQLQQ FWAEQRSEIE 60 QATDIKNHPL PPTRIRKIMK ADEDVRMISA EAPALFAKAC EMFTLEMTMR SWMVTKEDKR 120 RLLQRSDIAA AVARTDIYDF LLDLFTSEET EQGVLLPRTG QQPMGTQAGA YPYYYAPEQQ 180 VAGRSLVAVV VVSLEKHYEF VI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-42	55	144	3	92	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191493.1	1e-133	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	7e-70	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	M8CAA4	1e-146	M8CAA4_AEGTA; Nuclear transcription factor Y subunit C-2
STRING	EMT12058	1e-147	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-50	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]