PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12034
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 253aa    MW: 27591.6 Da    PI: 9.1551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12034genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.26.3e-40171552128
       NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
               +pGfrF Pt++el+ +yL+++++g++  ++++vi+ vd+y+++P++L++    +  ++ ++w+fF++r++++ +g r+ r+t sgyWkatg+   v+s+  
  EMT12034  17 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSHHPSHLRSmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWKATGSPSCVFSSss 117
               69*********************9995666678**************8434532223566*************************************9988 PP

       NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++++g+k+t+vfy+grap+g kt+W m+ey++
  EMT12034 118 saaagNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 155
               888877788***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-4312185IPR003441NAC domain
PROSITE profilePS5100544.40716186IPR003441NAC domain
PfamPF023652.8E-2218154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTTTSSGGAG GDLLGSTPGF RFYPTEDELL GFYLRHRLAG TTRPHVDRVI PVVDVYSHHP  60
SHLRSMAGEA SVQDAEQWFF FCPRAERELR GGRPARTTPS GYWKATGSPS CVFSSSSSAA  120
AGNSKVIGVK RTMVFYQGRA PTGAKTTWKM NEYKAVAADD DTTTGHQTTA PLRLRNEFSV  180
CRLYISTGTL RSFDRRPLNT SGNGQAAPRR HAPSAANTAS IGQADNYQGW STLVTTSTTD  240
VDNFCFDMDF NQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-271418413166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185458.10.0NAC domain-containing protein 90-like isoform X1
SwissprotQ9FMR32e-68NAC90_ARATH; NAC domain-containing protein 90
TrEMBLM8BYX60.0M8BYX6_AEGTA; NAC domain-containing protein 90
STRINGEMT120340.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-63NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]