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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 42145 Da PI: 7.2587 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.5 | 8e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +ppGfrFhPt+eel+++yL kkv++++++l +vi++vd++k+ePwd+++ ++ + +++wy Fs++dkky+tg+r+nrat++g+Wkatg+dk+++s EMT11879 11 VPPGFRFHPTEEELLTYYLSKKVASQRIDL-DVIPDVDLNKLEPWDIQArcRIGTgPQNDWYLFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIYS-AAG 109 69****************************.9***************953444443456**************************************.777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g++ktLvfykgrap+g+k+dW+mheyrl EMT11879 110 RIGMRKTLVFYKGRAPHGHKSDWIMHEYRL 139 8***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-55 | 7 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.679 | 11 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 12 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.24E-55 | 179 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLS KKVASQRIDL DVIPDVDLNK LEPWDIQARC 60 RIGTGPQNDW YLFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYSAAGR IGMRKTLVFY 120 KGRAPHGHKS DWIMHEYRLD DAVAPATNTV FAAGDASSYY SGISSPVRGV AGDQSPLAQE 180 DGWVICRVFK KNIVAQHQAG QSGGRGGGAA SNKLVGAGAV ERSQSNCSST VTAASDPAKA 240 QMMHCAGSDD GLDNILRYMD RSSAASCKQE TKPTNPSSSP LDQLINSACH SGSSTLYEKF 300 MKLPPLEYGG DWDALDRLAA YELNGLSDAA TAKTTNGMSY IVDELGGATT AYTSGGTAHS 360 SSLTGGGDGD LWSLARSVSS LHADLTMTCF NAVGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 11 | 139 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367801 | 0.0 | AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149598.1 | 0.0 | NAC domain-containing protein 66-like | ||||
Swissprot | Q84WP6 | 7e-99 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A453QJV5 | 0.0 | A0A453QJV5_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BYI0 | 0.0 | M8BYI0_AEGTA; NAC domain-containing protein 43 | ||||
STRING | EMT11879 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 3e-88 | NAC family protein |