PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11763
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 859aa    MW: 93017.1 Da    PI: 6.4199
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11763genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181875457
              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++t+eq+e+Le++++++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  EMT11763 18 YVRYTPEQVEALERVYNECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 75
              6789****************************************************97 PP
2START1619.1e-511813864204
               HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX CS
     START   4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqals 102
               ee+++++++ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l v  +g  g+++l++++++a++
  EMT11763 181 EETLTAFLSKATGTAVEWVQMMGMKPGPDSIGIIAVSHNCIGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVFPTGngGTIELIYMQTYAPT 280
               68899***************************************************.8888888888********************************** PP

               -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHH CS
     START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvat 199
               +l++ Rdf+++Ry+  l +g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  + ++k++ a+
  EMT11763 281 TLAApRDFWTLRYTCGLDDGSLVICERSLTQSTGGPSgpnTPGFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKIVAQKMTIAA 381
               **999****************************9999999************************************************************* PP

               TXXXX CS
     START 200 lqrqc 204
               l++ +
  EMT11763 382 LRHIR 386
               99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1271276IPR001356Homeobox domain
SMARTSM003895.9E-151480IPR001356Homeobox domain
CDDcd000865.45E-161777No hitNo description
SuperFamilySSF466896.42E-161778IPR009057Homeodomain-like
PfamPF000465.6E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-181975IPR009057Homeodomain-like
CDDcd146867.07E-669108No hitNo description
PROSITE profilePS5084823.819169388IPR002913START domain
CDDcd088754.53E-67173389No hitNo description
Gene3DG3DSA:3.30.530.206.0E-23178361IPR023393START-like domain
SMARTSM002341.3E-42178388IPR002913START domain
SuperFamilySSF559617.69E-38179389No hitNo description
PfamPF018521.5E-48181386IPR002913START domain
PfamPF086701.4E-46714858IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MARLSPGAAA PQVDTGKYVR YTPEQVEALE RVYNECPKPS SLRRQQIIRD CPILCNIEPK  60
QIKVWFQNRR CREKQRKESS RMQTVNRKLT AMNKLLMEEN DRLQKQVSRL VYENASVKSL  120
KTKIHKASAA TTDTSCESVA SAATTDTSCE SVVTSGQQQA LAAPRPQRDA NNPAGLLAIG  180
EETLTAFLSK ATGTAVEWVQ MMGMKPGPDS IGIIAVSHNC IGVAARACGL VSLEPTKVAE  240
ILKDRPSWYR DCRCVDILHV FPTGNGGTIE LIYMQTYAPT TLAAPRDFWT LRYTCGLDDG  300
SLVICERSLT QSTGGPSGPN TPGFIRAEVL PSGYLIRPCE GGGSMIHIVD HVDLDAWSVP  360
EVLRPLYESP KIVAQKMTIA ALRHIRQIAH ESSGEIPYGA GRQPAVLRTF SQRLSRGFND  420
AVSGFPDDGW SLLTSDGAED ITITVNSSPN KLVGSHISPS PLFSAIGGGI LCAKASMLVQ  480
DVPPALLVRF LREHRSEWAD PGVDAYSAAS LRASPYAVPG LRAGGFMGNQ VILPLAHTLE  540
HEEFLEVLRL EGHGFSHEEV LLARDMYLLQ LCSGVDENAS GACAQLVFAP IDESFADDAP  600
LLPSGFRVIP LDTKTDVPSA TRTLDLASAL EVGSGGALRG SGDSPGGCST RSVLTIAFQF  660
SFENHLRESV AAMARQYVRA VMASVQRVAM AIAPSRLGSQ IQLKHPPGSP EALTLASWIG  720
RSYRAHTGEE IRWSDTEEAD SPLKLLWNHS DAILCCSLKP APMFTFGNNA ALDMLETTLV  780
NLQDISLEAI LDDEGRKALC AEFSKVMQQG SAYLPGGVCK SSMGRQASYE QAVAWKVVGD  840
DVAGAPHCLA FMFVNWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163543.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLM8C9I00.0M8C9I0_AEGTA; Homeobox-leucine zipper protein HOX33
STRINGEMT117630.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]