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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 854aa MW: 92395.4 Da PI: 5.9216 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 98 | 153 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k EMT11484 98 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSKRLSLDARQVKFWFQNRRTQMK 153 678899***********************************************999 PP | |||||||
2 | START | 166.8 | 1.5e-52 | 312 | 577 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGG................... CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddke................... 70 ela +a++elvk+a+ ++p+Wv+ s es+n +e+l + + + + +ea+r+sg+v+ + ++ lve+l+d + EMT11484 312 ELAISAMDELVKMAQTDDPLWVTGSpgfpdkESLNFEEYLHSSQHCIGmkpvgFVSEASRESGLVIIDnSVALVETLMDEVQahtfpllifvpiykrclyy 412 57889******************999**99999999***9999666659999***********998651669*********9******************* PP .............CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTS CS START 71 .............qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssv 142 +W+ ++ ka++le +s+g gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d ++++ s EMT11484 413 ayytdvspfisqrRWSDMFScmiaKATILEEVSNGiggsrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsaatsAGSN 513 *************9*****9*****************************************************************8887777666544567 PP EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++lpSg+++++++ng++kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+ EMT11484 514 LKCRRLPSGCVMQDTPNGYCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 577 9*************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 78 | 157 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-21 | 79 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.123 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-20 | 96 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.89E-19 | 97 | 155 | No hit | No description |
Pfam | PF00046 | 6.5E-19 | 98 | 153 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.422 | 303 | 580 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-23 | 304 | 389 | No hit | No description |
CDD | cd08875 | 1.39E-103 | 307 | 576 | No hit | No description |
SMART | SM00234 | 3.1E-34 | 312 | 577 | IPR002913 | START domain |
Pfam | PF01852 | 7.3E-40 | 425 | 577 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-23 | 435 | 577 | No hit | No description |
SuperFamily | SSF55961 | 2.01E-17 | 606 | 844 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 854 aa Download sequence Send to blast |
MSFGGLFDGG GGGGGMQFPY AGAFSSSPAL SLGLDNAGAR DGGIGGRMFA DGAGGAMARD 60 AEAQNDSRSG SDHLDAISGV GDDDDDAEPS GSNPRKRKKR YHRHTPQQIQ ELEALFKECP 120 HPDEKQRAEL SKRLSLDARQ VKFWFQNRRT QMKTQLERHE NALLKQENEK LRTENLTIRE 180 AMRTPMCGGC GSPAMLGEVS LEEQHLRIEN ARLKDELNRV CTLATKFLGK PVSLLSPLQL 240 QPHLSMPLPN SSLELAVGGI GGIGSMQPSM HGMMSEYAGG ASSSMGTVIT PARATGPALA 300 SMVDIDRSVF LELAISAMDE LVKMAQTDDP LWVTGSPGFP DKESLNFEEY LHSSQHCIGM 360 KPVGFVSEAS RESGLVIIDN SVALVETLMD EVQAHTFPLL IFVPIYKRCL YYAYYTDVSP 420 FISQRRWSDM FSCMIAKATI LEEVSNGIGG SRNGALLLMK AELQVLSPLV PIREVIFLRF 480 CKQLAEGAWA VVDVSIDGLL SNQNSAATSA GSNLKCRRLP SGCVMQDTPN GYCKVTWVEH 540 TEYDEASVHQ FYRPLLRSGL AFGASRWLAT LQRQCECLAI LMSSATVSPN EPTAISQEGK 600 RSMLKLARRM TENFCAGVSA SSAREWSKLD GATGSIAEDV RVMARKSVSE PGEPPGVVLS 660 AATSVWVPIA PEKLFDFLRD EQLRAEWDIL SNGGPMQEMA RIAKGHQNGN SVSLLRASLT 720 LNWLKRFSQN GDMSRAMSAN QSSMLILQET CTDASGSIVV YAPVDIPAMQ LVMNGGDSTY 780 VALLPSGFAI LPDGPSIGSE HKTGGSLLTV AFQILVNSQP TAKLTVESVE TVNNLISCTI 840 KKIKTALQCA TPEC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 99 | PRKRKKR |
2 | 94 | 98 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00418 | DAP | Transfer from AT3G61150 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362919 | 0.0 | AK362919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011D04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178635.1 | 0.0 | homeobox-leucine zipper protein ROC5-like | ||||
Swissprot | Q6EPF0 | 0.0 | ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5 | ||||
TrEMBL | M8BXC9 | 0.0 | M8BXC9_AEGTA; Homeobox-leucine zipper protein ROC5 | ||||
STRING | EMT11484 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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