 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT11439 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 213aa MW: 24129.6 Da PI: 9.529 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT11439 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 69.5 | 3.1e-22 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
kri+n ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
EMT11439 9 KRIDNPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYQY 57
79*********************************************99 PP
|
| 2 | K-box | 31.6 | 6.9e-12 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
y++++++++++ ++ + el+k+ k + L++e+R + +d e+ ++ L Le++Le ++ k+Rs K++ + ++++l ++ + q e L kl
EMT11439 72 YEAATHTKVWSDIRQERRAELEKVAKMCDLLEKELRFMTVDDGEQYTVPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENMIRGKQAERYGLCDKL 169
566778889***********************************************************************999998888887777665 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 28.146 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.8E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.22E-26 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.5E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.4E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.5E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.5E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.8E-13 | 84 | 169 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 10.265 | 85 | 175 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP 60
TVPSVKGFVE RYEAATHTKV WSDIRQERRA ELEKVAKMCD LLEKELRFMT VDDGEQYTVP 120
SLAALEHNLE AAMHKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKVVEG 180
GSTSLNNGLD LKLGRFSQSI QNLVTVQDST RNG
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM502882 | 0.0 | AM502882.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM16 (WM16 gene). |
| GenBank | DQ512360 | 0.0 | DQ512360.1 Triticum aestivum MADS-box transcription factor TaAGL14 (AGL14) mRNA, complete cds. |
