PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT11010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NF-YA | ||||||||
Protein Properties | Length: 334aa MW: 35770.3 Da PI: 9.7313 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 97.8 | 1.1e-30 | 164 | 220 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh+hA+rR+Rg+gGrF EMT11010 164 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGTGGRF 220 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.1E-34 | 162 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.172 | 163 | 223 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.9E-24 | 166 | 188 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.2E-27 | 166 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.9E-24 | 197 | 220 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MMSFKGHDGF GQASNGGGGG GAPVPWWTVS QMLYGEPGAA LSSSPEPEVR RDGQFQVVPR 60 AQGILDPAPP APKGGAPEVL KFSVFQGNLE SGGNKGEKAL VHSATIALQS PLPEYNGRFE 120 FGPGPSMMSS GYPSADQCYG LLTTYAMKST PGSRLLLPLN ATADAPIYVN AKQYEGILRR 180 RRARAKVERE NQLVKGRKPY LHESRHRHAM RRARGTGGRF LNTKKEGDGK DAPGGGKRAD 240 CTPPTRFATS PSSVIPHSRS STPSPSRPPG VRSLSGSEVS SMYDHDDVDH YNSIEHLRTP 300 FFTPLPIIMD GEHGASAPFK WATAADGCCE LLKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 164 | 233 | 2 | 67 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 213 | RHRHAMRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009063 | 0.0 | BT009063.1 Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182505.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_020182506.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_020182507.1 | 0.0 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | M8BBH1 | 0.0 | M8BBH1_AEGTA; Nuclear transcription factor Y subunit A-10 | ||||
STRING | EMT11010 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 2e-24 | nuclear factor Y, subunit A6 |