PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

AP2

Protein Properties

Length: 348aa MW: 37916.3 Da PI: 5.9613

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT10947	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.6	4.7e-11	81	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g EMT10947 81 SRYHGVTRLKWSGKYEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 137 79*****************55558777778888.999999***********987 PP
2	AP2	46.6	8.4e-15	182	235	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e + k ++lg+f t+ eAa+a++ a+ +l+g EMT10947 182 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIQLRG 235 67***999.9**99953323..36******99**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.30E-12	81	149	No hit	No description
Pfam	PF00847	6.2E-8	81	137	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.77E-11	81	147	IPR016177	DNA-binding domain
PROSITE profile	PS51032	15.778	82	147	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-9	82	147	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-11	82	153	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-10	182	235	IPR001471	AP2/ERF domain
CDD	cd00018	1.63E-21	182	245	No hit	No description
SuperFamily	SSF54171	2.75E-17	182	245	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.4E-19	183	243	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.36	183	243	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-27	183	249	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-8	184	195	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-8	225	245	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MATTVQPHSP DPTAITTTPA PPPPPSPPRQ ENPTAAGEGV EIAALDEQPA AVAVADKGKT 60 APGGGKLVAE AMRKCAAPRS SRYHGVTRLK WSGKYEAHLW DNTSQVEGRK RKGKHGSYVT 120 EENAARAHDL AALKYWGITQ PTKLNFNISD YAKEIEIMKS MNQDEFVAYI RRQSSCFSRG 180 TSSYRGVTRR KDGKWQARIG RIGESRDTKD IYLGTFETEV EAAEAYDLAA IQLRGVHAVT 240 NFDISNYSEE GLKKLEGSSE VVNLEDQSEV TKLAVTNLDI SKHCEDGLKK LDGASQVVNL 300 EGQSEVTKLS VTNFDISNCC EDGLKKLEGS SEVANLEDQS EVTKLAGQ

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MATTVQPHSP DPTAITTTPA PPPPPSPPRQ ENPTAAGEGV EIAALDEQPA AVAVADKGKT  60
APGGGKLVAE AMRKCAAPRS SRYHGVTRLK WSGKYEAHLW DNTSQVEGRK RKGKHGSYVT  120
EENAARAHDL AALKYWGITQ PTKLNFNISD YAKEIEIMKS MNQDEFVAYI RRQSSCFSRG  180
TSSYRGVTRR KDGKWQARIG RIGESRDTKD IYLGTFETEV EAAEAYDLAA IQLRGVHAVT  240
NFDISNYSEE GLKKLEGSSE VVNLEDQSEV TKLAVTNLDI SKHCEDGLKK LDGASQVVNL  300
EGQSEVTKLS VTNFDISNCC EDGLKKLEGS SEVANLEDQS EVTKLAGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT008926	0.0	BT008926.1 Triticum aestivum clone wde1f.pk001.h1:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150541.1	0.0	AP2-like ethylene-responsive transcription factor AIL1
Swissprot	Q1PFE1	5e-65	AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBL	M8B2H7	0.0	M8B2H7_AEGTA; AP2-like ethylene-responsive transcription factor PLT2
STRING	EMT10947	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7864	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-67	AP2 family protein

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711]