PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MIKC_MADS

Protein Properties

Length: 273aa MW: 30705 Da PI: 7.3257

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT10914	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.5	2.3e-25	40	90	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++ien++ rqvtfskR+ g++KKA EL vLCda+v v++fs+tg+ly+ys+ EMT10914 40 EKIENTTSRQVTFSKRKGGLFKKARELGVLCDAQVGVLLFSNTGRLYDYSN 90 57***********************************************95 PP
2	K-box	79.1	1.1e-26	113	202	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a+a+ +q e ++L+++++nLq+++R+llG+ L+ L l++L Le+qLe+sl +iR K++l++++iee kk + +++en +L+kkl EMT10914 113 SASAEAKFWQAEGERLRQQLHNLQENNRQLLGQHLSGLGLEDLSGLEKQLETSLHNIRLAKDQLMIDEIEEFNKKGNLVHQENVELHKKL 202 678999**********************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	28.09	32	92	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-33	32	91	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.71E-36	34	110	No hit	No description
SuperFamily	SSF55455	4.84E-28	34	114	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-24	34	54	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-24	41	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-24	54	69	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-24	69	90	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	7.4E-25	115	202	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.465	118	208	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010440	Biological Process	stomatal lineage progression
GO:0048574	Biological Process	long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008134	Molecular Function	transcription factor binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MENVVAKILL PTPASVLAPC LVNHLNLRWY VMVRGKTVIE KIENTTSRQV TFSKRKGGLF 60 KKARELGVLC DAQVGVLLFS NTGRLYDYSN SNTGMKSLLE RYQQVKEGQQ FMSASAEAKF 120 WQAEGERLRQ QLHNLQENNR QLLGQHLSGL GLEDLSGLEK QLETSLHNIR LAKDQLMIDE 180 IEEFNKKGNL VHQENVELHK KLNIIHQENI YLQTKLNGQP EANGVITSSS SHCSIAARDG 240 ANLVRLELSQ PHHAERGEEP ESPTLGYGEI CVL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00410	DAP	Transfer from AT3G57230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371442	0.0	AK371442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2134C13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165070.1	1e-171	MADS-box transcription factor 23-like
Swissprot	Q6EP49	3e-75	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	M8BVU4	0.0	M8BVU4_AEGTA; MADS-box transcription factor 27
STRING	EMT10914	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP614	35	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-64	AGAMOUS-like 16

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]