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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 277aa MW: 29315.1 Da PI: 7.5295 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 72 | 96 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C +f+ t C++G++C+F+H+ EMT10786 72 KSKPCVRFFSTAGCRFGSNCHFIHD 96 7789********************6 PP | |||||||
2 | zf-CCCH | 30.4 | 6.5e-10 | 237 | 261 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC +far G C yGd C+FaH++ EMT10786 237 KTRLCAHFAR-GSCTYGDGCRFAHSE 261 8*********.*************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.582 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.13 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 72 | 98 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-7 | 72 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 72 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.18E-14 | 154 | 225 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.6E-11 | 156 | 226 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 15.997 | 157 | 221 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 4.4E-15 | 159 | 225 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.2E-13 | 161 | 221 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.99E-16 | 161 | 221 | No hit | No description |
PROSITE profile | PS50103 | 16.089 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-5 | 235 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 236 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-14 | 236 | 267 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAYSRELLLA VGSLEACKLL PADADLAKHP DDAALWVPSQ TLAGGAPGGL GDPELPRRNR 60 EPEEFQAGAG SKSKPCVRFF STAGCRFGSN CHFIHDIPAG SHAVAETSIP SGPAPAPAQD 120 EEELVRLNPT PPPLVMDKPR PTGDHALRAP TPPNAAPAMS KITVDASLAG AVIGRGGATI 180 REISRASGAR LRIRDHERDA GLKNVELEGT PDQIRHASAM VWEHLPVLGG GRYNGVKTRL 240 CAHFARGSCT YGDGCRFAHS ESELRRPAPA PRDPCGW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164499.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 7e-59 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A453NMX4 | 0.0 | A0A453NMX4_AEGTS; Uncharacterized protein | ||||
STRING | EMT10786 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-49 | C3H family protein |