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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT10371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 550aa MW: 57661.9 Da PI: 9.6278 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.7 | 5.5e-29 | 212 | 271 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + gCpv+k+v+r+aed ++++ tYeg Hnh+ EMT10371 212 MNDGCQWRKYGQKISKGNPCPRAYYRCTVEtGCPVRKQVQRCAEDMSILISTYEGAHNHP 271 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.703 | 207 | 273 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-29 | 209 | 271 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 211 | 272 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-35 | 212 | 272 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 213 | 271 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MIKGDQRQLG GHEERLKDQM RDDHRASDGN FFKFLQNQSS TKKEAQEDKI ASTRAEMGEV 60 RKENERLKIM LSRMVEDHRS LQKQFDVLHH QGRGKDIAVG SPEHTSAVDG PGFVSLHLGT 120 SAGMSRQNMG EEIKGSTNNP DDKGIFLGLS SACGAVGART DGSETKVRPD VVTLSPGGSS 180 KEEAAETTTS ATASKMAKNP RSTGSGAVTE EMNDGCQWRK YGQKISKGNP CPRAYYRCTV 240 ETGCPVRKQV QRCAEDMSIL ISTYEGAHNH PLSASATAMA STTSAAASML VSGSSTSLGF 300 PSAASSLHGL RFGIPGVASS TSTNELGGRP FFLPAAAGAS ISATPSYPTI TLDLTSQAAS 360 QQAFSLSNTN RFSSSSTGSY GHNTSAGRYP STSFSFSGSG ASSLPGATPW PAGVGSYLSY 420 GSSPSAPYNG AGKSSFEAAL SGINGRQQGS AAFLYQPVQQ RAAPVSGGST APTVLTDTIA 480 KAITSDPGFH TALAAAITSY VGKPAAGGSK GLEWGEAWGP PLRQPRRARR QCWHDRHQRG 540 PHRAVPQTAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 212 | 274 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-19 | 212 | 274 | 17 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248555 | 0.0 | AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199168.1 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | M8B8Q8 | 0.0 | M8B8Q8_AEGTA; Uncharacterized protein | ||||
STRING | EMT10371 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 3e-43 | WRKY DNA-binding protein 61 |