PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT09847

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 976aa MW: 108924 Da PI: 10.2104

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT09847	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	370	406	2	39
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 grW+++Ed++l vk++ +g+W++Ia+ ++ gRt q EMT09847 370 GRWSEDEDKRLMVSVKLFRSGSWNKIAQFLP-GRTQSQ 406 8****************************.*765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.76	264	362	IPR017877	Myb-like domain
SMART	SM00717	0.011	268	364	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-7	269	301	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-13	337	409	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-13	343	410	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.097	363	420	IPR017930	Myb domain
SMART	SM00717	0.0044	368	418	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-8	370	406	IPR001005	SANT/Myb domain
CDD	cd00167	9.30E-7	371	415	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MAPAPCNELD QIAQGSARSF PSAWTTAVAA TDGLSDEEEE EDLALVRSIR ENLHLNKASP 60 SSPRPICIWP PSFMEDDLET LRAIQRRFSH YHSGTSTGPL ENMKNEASKG GDDEFIAHRP 120 GEEDVQSKNT KALTQTGFPK AALLLVDALK KNRACQKFIR RKMINIEAKI EVNKDLRDRV 180 KCLMDYQLSC RRSFSNFLCQ KVDPRVRLIS SEKQSAQSAK EQIIRHLQKS ILFLQNKCKM 240 SPLLLGPAEN PHIEKYKVVL KQFPISLQKH SWSDTEKDRL AKGIKQQYQE MLIKDSMKNG 300 SSSGDFSAVD MAYALTNTGG NFEATHEILR SVLPLVNWDY IAAMYLPGRS GAECESRWRK 360 TLNPERKRVG RWSEDEDKRL MVSVKLFRSG SWNKIAQFLP GRTQSQSSER RWKRLCQDEL 420 PLVIAANQVK KTIFQTNFVD RETERPAICP SDFPSLVYSK VDRRDENTAS DQVKKPRKRS 480 RRSCADNVPS GDPLKSSADV AAKRMRGSIS VDDESTLDIL GGPISFDDEA PANRQRVPTF 540 VGKEGTGKKR TRGSGSVGNE GAVKKKMRGS VSVGDGRAVK NRMRGSVSVD NQGSTTKRKR 600 VSRKSAKGNS TTDGGVNACE LALPSVPSEA CAERGIDTGN TNKMKWKSTP RPKQINMAEG 660 TVDEYSRLAD CIPFARGNGT SRNNNRSQSV QSLVSCLLYK EGFPYPINIG GRSNLVKLEK 720 QEDTWAKSSL QAFVDFSGNP VMESLLCHSA SQFKHWSTFL MYTHYFYFFA AKTFNLFIFN 780 YGSTTNTRNN NKNTSRYVDH LATTTSTEAT KGAPLSSPLP SGSWANFVVV DGREVVVLRP 840 HKTNAPEQNH RGEECRSKGS NLKTHKRRRM TNDEQIQTNP SKTDLPETHL HTPTMMLDAS 900 PERGLGGETF IASSRSHRHL TFLSRTQTRT KLEKRSKNEA LPPARAEIHS ASMTLRPLET 960 GRTGVGTGGT VGGREP

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MAPAPCNELD QIAQGSARSF PSAWTTAVAA TDGLSDEEEE EDLALVRSIR ENLHLNKASP  60
SSPRPICIWP PSFMEDDLET LRAIQRRFSH YHSGTSTGPL ENMKNEASKG GDDEFIAHRP  120
GEEDVQSKNT KALTQTGFPK AALLLVDALK KNRACQKFIR RKMINIEAKI EVNKDLRDRV  180
KCLMDYQLSC RRSFSNFLCQ KVDPRVRLIS SEKQSAQSAK EQIIRHLQKS ILFLQNKCKM  240
SPLLLGPAEN PHIEKYKVVL KQFPISLQKH SWSDTEKDRL AKGIKQQYQE MLIKDSMKNG  300
SSSGDFSAVD MAYALTNTGG NFEATHEILR SVLPLVNWDY IAAMYLPGRS GAECESRWRK  360
TLNPERKRVG RWSEDEDKRL MVSVKLFRSG SWNKIAQFLP GRTQSQSSER RWKRLCQDEL  420
PLVIAANQVK KTIFQTNFVD RETERPAICP SDFPSLVYSK VDRRDENTAS DQVKKPRKRS  480
RRSCADNVPS GDPLKSSADV AAKRMRGSIS VDDESTLDIL GGPISFDDEA PANRQRVPTF  540
VGKEGTGKKR TRGSGSVGNE GAVKKKMRGS VSVGDGRAVK NRMRGSVSVD NQGSTTKRKR  600
VSRKSAKGNS TTDGGVNACE LALPSVPSEA CAERGIDTGN TNKMKWKSTP RPKQINMAEG  660
TVDEYSRLAD CIPFARGNGT SRNNNRSQSV QSLVSCLLYK EGFPYPINIG GRSNLVKLEK  720
QEDTWAKSSL QAFVDFSGNP VMESLLCHSA SQFKHWSTFL MYTHYFYFFA AKTFNLFIFN  780
YGSTTNTRNN NKNTSRYVDH LATTTSTEAT KGAPLSSPLP SGSWANFVVV DGREVVVLRP  840
HKTNAPEQNH RGEECRSKGS NLKTHKRRRM TNDEQIQTNP SKTDLPETHL HTPTMMLDAS  900
PERGLGGETF IASSRSHRHL TFLSRTQTRT KLEKRSKNEA LPPARAEIHS ASMTLRPLET  960
GRTGVGTGGT VGGREP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	473	481	KKPRKRSRR
2	546	552	GKKRTRG
3	861	867	LKTHKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368554	0.0	AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150877.1	0.0	uncharacterized protein LOC109736068
TrEMBL	M8AZC9	0.0	M8AZC9_AEGTA; Myb-like protein L
STRING	EMT09847	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6594	35	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	2e-50	myb domain protein 4r1