PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT09624

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 1424aa MW: 158671 Da PI: 7.4493

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT09624	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00083	1205	1228	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 ++C C++sF+++ +L H r EMT09624 1205 FPCDieGCDMSFNSQQDLLLHKRD 1228 789999***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	9.6	1205	1227	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	15	1228	1252	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	1228	1257	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.6E-4	1230	1256	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1230	1252	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-10	1257	1282	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0016	1258	1282	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.406	1258	1287	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1260	1282	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.56E-10	1268	1311	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.5E-10	1283	1311	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.24	1288	1314	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.177	1288	1319	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1290	1314	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1424 aa Download sequence Send to blast
MASFLHSQID KSTAAAPTRI RDLKDLSTPL SQDPKICEIV WGSGEGFDHF GSIVRSLSPA 60 CAGSGEGSDH FGSIVRSLPL HFCKRLFPGL EPVTSWSQGN NFTAAPRLPF INVAFQTLNQ 120 KTTVLSPEVL LSAGVPCCRY FSKADWFRTL ENLLSPSLEL IIVVLAMANL KELTAVDGFN 180 CGEATNIATP LWLQVAKEAA IRRASTNCGP MISHYQLLYK LALSLSQREP KDFHTLPRSS 240 RLRDKKKKDE GDTMVKEKFV GSVIENNNLL SILLDKSSCI IVPETPFPPT SFPTMMKPEL 300 TVKQSLTGGH CSISQQAVHN MSVDVALDKS IVVENMSHSQ SVTEASLSAY NRRKLYETKY 360 GELGTAAFCL SPSKLQSGVT DKDKRGGLLD QGRLPCVQCG ILSFACVAII QPREAAVQFV 420 LSREGISSSA KPGEVSESDG ISNWITKNIE IVPQQGQASE ALSVSLAHVS DRCGQLYSRN 480 NNGSTSALGL LASTYGSSDS EEESNQGKDN QLLETSVSFS STVQRQRSNS HLYEECCEAK 540 TTTSLLKSIE DNSTTITRCG RDTDINHLAK LREQGTTYDQ CSVYVDLAND LTISGVKAYS 600 DTHVTTAKSS IEPDVLTQLK YNNDSCRMHV FCLEHALGTW TQLQEIGGAN VMLLCHPEYP 660 RAESAAKFIA EELGLKPDWK DVAFEEATDD DIRRIQLALH DEDAEPASSD WAVKMGINIY 720 YSAKQSKSPL YSKQIPYNSI IYEAFGQENP DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN 780 QVHPFLVREH EEHNRAIVCS KVMLGANYHE IVYDEPSLTC NTMVDCSPSK RISRRKGRDS 840 IEKSGARKKR CSANDEAILH CSSLGMNSKT ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ 900 YTLQSMNMKS SSNKPKDDKG NRNFLDLYDE ANDVDCWFNI DSGDNAAIRH LEDSRQQELG 960 TVKAKSPGKL QGNMRKSSKC KARDDSLNGD KKVQKMNKKS ISRKQKDVEI NTQFREEYEG 1020 DNNWEEVPEG KDHDVKEESR AKTRNGEDDK RNNNSHELHD EDNDMDCWHD IQGGDNATMG 1080 NLDNSPVQRL EAAEVKSGGK LHCCKRKPSK GKAKDDYSNG DERLQMLNIE SISRKQKSDS 1140 QFDEGCDRDN ALNSLLNDVD EATRENCYEV REEEMDGMEV KPRGKVQTGK RKTSRCQAGD 1200 KAAKFPCDIE GCDMSFNSQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHMDERPLNC 1260 EWKGCKKTFK WPWARTEHMR VHTGVRPYEC MVPGCGQTFR FVSDFSRHKR KTGHSSENFC 1320 ALAEAGIWNI PKSGRSNYKE TGSLKATWLY NSTCGQIAHN TIAHPGRSNA FARSCESVSN 1380 TTRTRPSLAA IVIAWDIATA FAAKASLTLS FLPARAQSRP PPLI

Sequence ? help Back to Top

Protein Sequence Length: 1424 aa Download sequence Send to blast

MASFLHSQID KSTAAAPTRI RDLKDLSTPL SQDPKICEIV WGSGEGFDHF GSIVRSLSPA  60
CAGSGEGSDH FGSIVRSLPL HFCKRLFPGL EPVTSWSQGN NFTAAPRLPF INVAFQTLNQ  120
KTTVLSPEVL LSAGVPCCRY FSKADWFRTL ENLLSPSLEL IIVVLAMANL KELTAVDGFN  180
CGEATNIATP LWLQVAKEAA IRRASTNCGP MISHYQLLYK LALSLSQREP KDFHTLPRSS  240
RLRDKKKKDE GDTMVKEKFV GSVIENNNLL SILLDKSSCI IVPETPFPPT SFPTMMKPEL  300
TVKQSLTGGH CSISQQAVHN MSVDVALDKS IVVENMSHSQ SVTEASLSAY NRRKLYETKY  360
GELGTAAFCL SPSKLQSGVT DKDKRGGLLD QGRLPCVQCG ILSFACVAII QPREAAVQFV  420
LSREGISSSA KPGEVSESDG ISNWITKNIE IVPQQGQASE ALSVSLAHVS DRCGQLYSRN  480
NNGSTSALGL LASTYGSSDS EEESNQGKDN QLLETSVSFS STVQRQRSNS HLYEECCEAK  540
TTTSLLKSIE DNSTTITRCG RDTDINHLAK LREQGTTYDQ CSVYVDLAND LTISGVKAYS  600
DTHVTTAKSS IEPDVLTQLK YNNDSCRMHV FCLEHALGTW TQLQEIGGAN VMLLCHPEYP  660
RAESAAKFIA EELGLKPDWK DVAFEEATDD DIRRIQLALH DEDAEPASSD WAVKMGINIY  720
YSAKQSKSPL YSKQIPYNSI IYEAFGQENP DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN  780
QVHPFLVREH EEHNRAIVCS KVMLGANYHE IVYDEPSLTC NTMVDCSPSK RISRRKGRDS  840
IEKSGARKKR CSANDEAILH CSSLGMNSKT ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ  900
YTLQSMNMKS SSNKPKDDKG NRNFLDLYDE ANDVDCWFNI DSGDNAAIRH LEDSRQQELG  960
TVKAKSPGKL QGNMRKSSKC KARDDSLNGD KKVQKMNKKS ISRKQKDVEI NTQFREEYEG  1020
DNNWEEVPEG KDHDVKEESR AKTRNGEDDK RNNNSHELHD EDNDMDCWHD IQGGDNATMG  1080
NLDNSPVQRL EAAEVKSGGK LHCCKRKPSK GKAKDDYSNG DERLQMLNIE SISRKQKSDS  1140
QFDEGCDRDN ALNSLLNDVD EATRENCYEV REEEMDGMEV KPRGKVQTGK RKTSRCQAGD  1200
KAAKFPCDIE GCDMSFNSQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHMDERPLNC  1260
EWKGCKKTFK WPWARTEHMR VHTGVRPYEC MVPGCGQTFR FVSDFSRHKR KTGHSSENFC  1320
ALAEAGIWNI PKSGRSNYKE TGSLKATWLY NSTCGQIAHN TIAHPGRSNA FARSCESVSN  1380
TTRTRPSLAA IVIAWDIATA FAAKASLTLS FLPARAQSRP PPLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	3e-55	1202	1315	20	133	Lysine-specific demethylase REF6
6a58_A	3e-55	1202	1315	20	133	Lysine-specific demethylase REF6
6a59_A	3e-55	1202	1315	20	133	Lysine-specific demethylase REF6
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	248	RDKKKKD
2	833	849	RRKGRDSIEKSGARKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201011.1	0.0	lysine-specific demethylase JMJ705-like
TrEMBL	M8BS26	0.0	M8BS26_AEGTA; Zinc finger protein 410
STRING	EMT09624	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6718	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-101	relative of early flowering 6