 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT09606 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 351aa MW: 39459.3 Da PI: 7.8319 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT09606 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 52.9 | 6.1e-17 | 96 | 140 | 12 | 56 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k
EMT09606 96 VRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 140
689*****************************************9 PP
|
| 2 | Homeobox | 27.8 | 4.2e-09 | 170 | 191 | 35 | 56 |
HHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 35 kklgLterqVkvWFqNrRakek 56
kkl+ + rqV +WFqNrRa++k
EMT09606 170 KKLQSEPRQVAIWFQNRRARWK 191
5788899**************9 PP
|
| 3 | HD-ZIP_I/II | 114.1 | 8.7e-37 | 96 | 174 | 11 | 89 |
HD-ZIP_I/II 11 vklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
v++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++
EMT09606 96 VRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQS 174
89***************************************************************************96 PP
|
| 4 | HD-ZIP_I/II | 74.8 | 1.5e-24 | 170 | 227 | 34 | 91 |
HD-ZIP_I/II 34 reLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
++L+ +prqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
EMT09606 170 KKLQSEPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 227
689999*************************************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MASNGMASSP SAFFPPNFLL HMQQAPPQHD PQEHHQHHHH HHHEHHLPPP HPQHNPFLPF 60
PQCPSLQDFR GGLSPMLGKR PAMYGGGDGG CGGGEVRTLE KNFEVANKLE PERKMQLARA 120
LGLQPRQVAI WFQNRRARWK TKQLEKDYDV LKRQFDAVKA ENDALLSHNK KLQSEPRQVA 180
IWFQNRRARW KTKQLEKDYD VLKRQFDAVK AENDALLSHN KKLQSEILGL KGCREAASEL 240
INLNKETEAS CSNRSENSSE INLDISRTPP SDGPMDAPPS HQQGGGGGGM IPFYPSVARP 300
AGVDIDHLLH ASVPKMEHHH GGPDTASFGN LLCGVDEPPP FWPWADHQQF N
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 185 | 193 | RRARWKTKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK359041 | 0.0 | AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18. |
| GenBank | AK359747 | 0.0 | AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15. |
| GenBank | AK366245 | 0.0 | AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22. |
| GenBank | AK367318 | 0.0 | AK367318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054L16. |
