![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT09507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 993aa MW: 111590 Da PI: 4.617 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 8e-09 | 463 | 485 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p EMT09507 463 NCPSYMSKGTCTYGPSCHFNHPP 485 7********************96 PP | |||||||
2 | zf-CCCH | 35.6 | 1.6e-11 | 523 | 545 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ EMT09507 523 RNCDYYMRTGACRYGKNCHFNHP 545 79********************9 PP | |||||||
3 | zf-CCCH | 28.7 | 2.2e-09 | 722 | 748 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f++r+G Ck+ + C+++H++ EMT09507 722 PGRADCPFYMRFGDCKFASACNYHHPK 748 6899*********************96 PP | |||||||
4 | zf-CCCH | 35.8 | 1.3e-11 | 757 | 782 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck+G++CkF H++ EMT09507 757 DEPECPFLMKRGYCKFGAQCKFYHPE 782 689*********************96 PP | |||||||
5 | zf-CCCH | 21.7 | 3.6e-07 | 826 | 852 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ EMT09507 826 PGQPECRYYMQFGKCKYLSACIFHHPK 852 5789*********************96 PP | |||||||
6 | zf-CCCH | 28.5 | 2.7e-09 | 869 | 893 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++ G C++G+ C F H++ EMT09507 869 MPDCPFYMKAGKCQFGSACEFRHPK 893 789********************96 PP | |||||||
7 | zf-CCCH | 18.2 | 4.6e-06 | 935 | 961 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++r G+Ck+ +Ck++H++ EMT09507 935 PGEPECAHYMRQGYCKFQMNCKYHHPK 961 5799*********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.7E-4 | 458 | 485 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-5 | 458 | 485 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 458 | 486 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-7 | 463 | 485 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 464 | 484 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 519 | 546 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 519 | 547 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 522 | 547 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 523 | 545 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 525 | 545 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 721 | 748 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 721 | 749 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-6 | 722 | 748 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 755 | 782 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 755 | 783 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-9 | 757 | 782 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 759 | 783 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 761 | 783 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.012 | 825 | 852 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.422 | 825 | 853 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 827 | 852 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 866 | 894 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 866 | 893 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-7 | 869 | 893 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.056 | 934 | 962 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.022 | 934 | 961 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001709 | Biological Process | cell fate determination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 993 aa Download sequence Send to blast |
MENDDDAVQV QEAAVEQQDA THPRDEDIAV EGQETPEAHQ LGSTENADAL VQVQEEGESA 60 DATAVDDHDK AVEQCTTYHD LGTTMENDVA KDDPEEAEQG VIDQGDAAID DVKDHEVLLL 120 VAVEGTRATT DDIAAVEDQG NNVEQCTTYY DLGTTMKSDD DVDDQQVVEQ GVVDLTMDDY 180 ASVEEQEVVE ERVVDLTMDD DDSVQDHKVL QQGIIDGTDD IAVEKQEKVL EQCSRATKDE 240 YTVKEKEMVV EQGVIDPRYM DLATEDQVKL SIVDDQGTVP MDDIVVKDHD KAVVQYASDA 300 IVTIKDESPV EEHDTVGNQG VIDKNGRTKD DIDVEGHGYV KEQVIVDNWG TSSDATALEG 360 QKNEAEPRIG DEQIAGKDMD GVHAEGNMLE QRTGDKQGAT QSDFTVDKHK DVAERVRHER 420 GAPEDDRAMD RTAYQGTGDW GIVSKEKYKL PARRYPQKPR KLNCPSYMSK GTCTYGPSCH 480 FNHPPQLKSR SDESWRPSER RNHGAAEILE LNRLGLPIRE GARNCDYYMR TGACRYGKNC 540 HFNHPDHVID AQFNPPTGWE DNALQMEKSS DHTLDETSRM KKSSDDATFD DRSHMKKSSD 600 DATLDDRSHL KKPSDGAIVD DTSYSKKSSD HDNSSSSGVL PPSIFRMLLP PQKVLPSTEG 660 KAKKKSDWSS DDSDGCCSAD SSDGPLCKQG EHVDYPERPG RPEYHHPKQS KDKEEVHYPE 720 RPGRADCPFY MRFGDCKFAS ACNYHHPKDK YPAARPDEPE CPFLMKRGYC KFGAQCKFYH 780 PEDSNPTVQS PTDAKRSVTT DEHHPSTRIT LQDYMLPQQP QYPERPGQPE CRYYMQFGKC 840 KYLSACIFHH PKDRLAAHSD QIGPEIHGMP DCPFYMKAGK CQFGSACEFR HPKDIHSTTE 900 EAFGQRTGSG AYDNLSRSDN GVEQQEESIM YPERPGEPEC AHYMRQGYCK FQMNCKYHHP 960 KKHEVIRADH LSKAGTRWLP HECYQRKGVP LVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK369202 | 0.0 | AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181184.1 | 0.0 | uncharacterized protein LOC109766829 | ||||
TrEMBL | M8AYF3 | 0.0 | M8AYF3_AEGTA; Zinc finger CCCH domain-containing protein 8 | ||||
STRING | EMT09507 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14729 | 18 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-40 | floral homeotic protein (HUA1) |