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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT09164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Trihelix | ||||||||
Protein Properties | Length: 442aa MW: 50238.1 Da PI: 6.585 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.5 | 5.6e-26 | 118 | 214 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++Li+a ++++e+ +++ kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ t++++++ +++d+++ EMT09164 118 KWTDSMVKLLITAASYTGEDPGADLgcgrrncamvHKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVENPALLDRMD 214 7*********************8633466677888**********************************************77*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.7E-20 | 116 | 240 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MEGNNLPPGN FMQGATYGSS DLHRNPMQMH GPSSDNPGFN HSQIPGKFPM PMNQVTASDH 60 LSEFQFREQR KADHHQVHHH HYPKKDSMSD DEEHGLNEDT TDSHSGKGKK GSAWQRMKWT 120 DSMVKLLITA ASYTGEDPGA DLGCGRRNCA MVHKKGKWKA ISKVMGERGC NVSPQQCEDK 180 FNDLNKRYKR LTDILGRGTT CKVVENPALL DRMDNLSDKL KDDARKILSS RHLFYEEMCS 240 YHNNNRISLP EDPALQRSLQ FALRCKEEND MMRGASGDAD EDDQSSDSDY EEDNDEDHQV 300 AHSNKGGLPM QKKMWYTADH EDAGFGNSLS AHECSRRSNP HGITLDINKV VPDGTSLALT 360 QKDLVLQSAE LEKQCLKIEN EALELAEQRL KWELSSKIKD KELERMRSDN EHMKIEIKRL 420 KLEVRRKELE LELKLKGNGS HS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196126.1 | 0.0 | uncharacterized protein LOC109781950 | ||||
Refseq | XP_020196127.1 | 0.0 | uncharacterized protein LOC109781950 | ||||
Refseq | XP_020196128.1 | 0.0 | uncharacterized protein LOC109781950 | ||||
TrEMBL | A0A3B6MNK5 | 0.0 | A0A3B6MNK5_WHEAT; SAB | ||||
TrEMBL | A0A453K8U8 | 0.0 | A0A453K8U8_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BQV9 | 0.0 | M8BQV9_AEGTA; Uncharacterized protein | ||||
STRING | EMT09164 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 8e-96 | sequence-specific DNA binding transcription factors |