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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08992 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 425aa MW: 48545 Da PI: 7.9174 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 352 | 384 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 r +WT eE+ v+a++ +G++ W+ Ia+ ++ +R EMT08992 352 REAWTIEEEHAVVNAHRVYGNK-WAEIAKVLP-RR 384 789*******************.******999.65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.580.10 | 3.7E-8 | 84 | 127 | IPR016142 | Citrate synthase-like, large alpha subdomain |
Pfam | PF00285 | 3.5E-7 | 236 | 285 | IPR002020 | Citrate synthase |
Gene3D | G3DSA:1.10.230.10 | 5.9E-7 | 246 | 284 | IPR016143 | Citrate synthase-like, small alpha subdomain |
SuperFamily | SSF48256 | 3.01E-10 | 247 | 286 | IPR002020 | Citrate synthase |
PROSITE pattern | PS00480 | 0 | 251 | 263 | IPR019810 | Citrate synthase active site |
PROSITE profile | PS50090 | 6.992 | 347 | 384 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-8 | 351 | 384 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.45E-7 | 351 | 386 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-7 | 352 | 384 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-4 | 354 | 384 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006099 | Biological Process | tricarboxylic acid cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046912 | Molecular Function | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MTRFPNRNFP VRLEHPVPIG GSQRPNLTWE ESVKRDLKDW SITKELAMDR GFEFGLRRWT 60 EAKAWYRLAD LDMSHLLFIV LLRTLNGLAG PLHGLANQVV VVREKFPELY ESEQQWLRAA 120 QMLSGIDLDS GIRLKQAFVS LYMSLDFLSP GNLTNFLKTR MLDDTNKLSK CVQIARLYLE 180 YDDAVNAEAF INKDSFLVTN SNQEVLNLQY KVCYVRILDL KRKFLEAALR YYGISQILSN 240 AKLGTMAVVP GYGHGVLRNT DPRYSCQREF TLKYLPEDPL FQLVQPCGSG HVTLALYCVA 300 KDTDGLGLHT MQMCCIHNYL LAPDICAQNA VWTDKMVSLQ GGCIGKQCQE KREAWTIEEE 360 HAVVNAHRVY GNKWAEIAKV LPRRFFSPIA KVKDDKPSEL LELQDTQNHR LAVLGSDERQ 420 PLLST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4d0p_A | 7e-21 | 84 | 235 | 112 | 236 | COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
4d10_D | 7e-21 | 84 | 235 | 92 | 216 | COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
4d10_L | 7e-21 | 84 | 235 | 92 | 216 | COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
4d18_D | 7e-21 | 84 | 235 | 92 | 216 | COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
4d18_L | 7e-21 | 84 | 235 | 92 | 216 | COP9 SIGNALOSOME COMPLEX SUBUNIT 4 |
4wsn_b | 7e-21 | 84 | 235 | 92 | 216 | COP9 signalosome complex subunit 4 |
4wsn_D | 7e-21 | 84 | 235 | 92 | 216 | COP9 signalosome complex subunit 4 |
4wsn_j | 7e-21 | 84 | 235 | 92 | 216 | COP9 signalosome complex subunit 4 |
4wsn_L | 7e-21 | 84 | 235 | 92 | 216 | COP9 signalosome complex subunit 4 |
4wsn_r | 7e-21 | 84 | 235 | 92 | 216 | COP9 signalosome complex subunit 4 |
4wsn_T | 7e-21 | 84 | 235 | 92 | 216 | COP9 signalosome complex subunit 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250447 | 1e-120 | AK250447.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf79o07, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M8AWZ6 | 0.0 | M8AWZ6_AEGTA; COP9 signalosome complex subunit 4 | ||||
STRING | EMT08992 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-13 | myb domain protein 3r-5 |