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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 64aa MW: 7677.84 Da PI: 10.5221 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.6e-10 | 12 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++WT+ + l+++v ++G g+Wk I + + R+ + k++++++ EMT08928 12 RKKWTEIQERTLIEGVDKYGRGNWKDIKIAYPdvfQDRSTVDMKDKFRNL 61 79*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.145 | 7 | 64 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 9 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.66E-14 | 10 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-4 | 11 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-8 | 12 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.08E-16 | 13 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
MRPPPAVPYK TRKKWTEIQE RTLIEGVDKY GRGNWKDIKI AYPDVFQDRS TVDMKDKFRN 60 LGRH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158353.1 | 8e-40 | uncharacterized protein LOC109743674 | ||||
TrEMBL | M8C154 | 5e-40 | M8C154_AEGTA; Uncharacterized protein | ||||
STRING | EMT08928 | 9e-41 | (Aegilops tauschii) | ||||
STRING | Traes_2AS_87EF37490.1 | 3e-39 | (Triticum aestivum) | ||||
STRING | Traes_2DS_C9D25868F.1 | 2e-40 | (Triticum aestivum) | ||||
STRING | TRIUR3_12694-P1 | 2e-39 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13998 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 3e-12 | TRF-like 5 |