PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08925
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 907aa    MW: 104194 Da    PI: 6.9927
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08925genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1635123198
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               ffk +    ++++g +++p kf+++ gg    s  ++le+++g++++v +   k  +  vl++GW++F++  +L+egD + Fk++g+s f  +v +++
  EMT08925  35 FFKLM--LGNFRNG-VTIPEKFVRSVGGM--ISELVKLETPDGNTYNVHI--AKELNNLVLRSGWSKFASVYELQEGDLLRFKYNGDSHF--KVEIYD 123
               56666..6677776.***********776..6678***************..**********************************9999..888776 PP
2B343.94.1e-142643451799
               E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                + k+ a +h     ++  +tl + +++++W   ++  + +++y l++GW +Fv++n+L+ gD++vF++ +r ++f++ v+++++
  EMT08925 264 LICKDDAIKHLPR--KDEFITLCHaSHSKTWGAHYN-INADDTYHLSAGWLRFVDDNQLQKGDTCVFEVLKRqRSFTMAVHLLKA 345
               5667777777322..3334555554899*******3.44445699***********************88777*******99876 PP
3B333.76.5e-114365003599
               EEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  35 tltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                 +l    ++  W+ ++  r  ++r +l kGW++Fv +n+L+  D+++F+++++ ++ +++v+++rk
  EMT08925 436 IFRLHRpGESAPWKAEF--RSFGSRRWLVKGWEQFVIDNELELDDVCLFERIENkKKLRMMVHIIRK 500
               45555523447899999..5555555699***********************999**********98 PP
4B361.11.9e-19557648199
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               ffk + +    +++r+++p kfa+++  ++++s+   le +sg++W v +  +k  +  ++++GW +Fvka++L+e+D +vF+++g+s+f   v +f++
  EMT08925 557 FFKLM-T--QDSQQRFRIPDKFASSFIRQTQSSQGFDLEAPSGETWHVGV--TKVANDLFFSSGWGDFVKAHELQENDLLVFTFSGNSSF--EVLIFDA 648
               56655.3..3455679**********777788899***************..**********************************9999..8888876 PP
5B352.21.1e-168038771187
               HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
        B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
               +k++ lv+p +f++eh      +s +++l    + ++W v++ y+++s+r + ++ W +Fv++n+L+egD++vF+l++ 
  EMT08925 803 HKNNFLVIPSEFVDEHlH-M--RSHEVVLLRpNREERWHVRY-YQGSSSRGFRGQPWAKFVRENELREGDVCVFELIKG 877
               567889**********52.3..3445555552778*******.999999989999********************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-1928127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-2029127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.47832125IPR003340B3 DNA binding domain
CDDcd100177.32E-1733123No hitNo description
SMARTSM010197.6E-1435125IPR003340B3 DNA binding domain
PfamPF023622.0E-1435123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-15235346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-15236345IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-9240344No hitNo description
SMARTSM010190.0029242346IPR003340B3 DNA binding domain
PfamPF023622.9E-11264345IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702281346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15395500IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19396500IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-12401499No hitNo description
SMARTSM010196.4E-11403501IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152404501IPR003340B3 DNA binding domain
PfamPF023624.4E-9417500IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-22550651IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-22554651IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.663554649IPR003340B3 DNA binding domain
CDDcd100173.02E-20557647No hitNo description
SMARTSM010192.7E-16557649IPR003340B3 DNA binding domain
PfamPF023621.7E-16557648IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-19784878IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-18785877IPR015300DNA-binding pseudobarrel domain
CDDcd100172.56E-15790877No hitNo description
SMARTSM010196.1E-13792899IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239793897IPR003340B3 DNA binding domain
PfamPF023622.5E-14794877IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MPVQSDQRMD KSCTRCKDYV AHQYWDHMDN RKKRFFKLML GNFRNGVTIP EKFVRSVGGM  60
ISELVKLETP DGNTYNVHIA KELNNLVLRS GWSKFASVYE LQEGDLLRFK YNGDSHFKVE  120
IYDPSACEKE IYCVVMNHNP GLQKRSVPHD NQMLSPEGER LAKRQNGCCS DGCKTSEMNP  180
AGSPHKPTKK EVPSSEDARS SGERKTFTRS HYFLATGCNL TDAHKVEVDK IEQNIRPEIP  240
LYVKTMSSAS LVDGFLIICN RSYLICKDDA IKHLPRKDEF ITLCHASHSK TWGAHYNINA  300
DDTYHLSAGW LRFVDDNQLQ KGDTCVFEVL KRQRSFTMAV HLLKASHHQP PGFPTSSNSL  360
RPEVKSFRPE DKVRLSRFTT LEGLLKTKVY EKVEAIKPEI PVFVSIMMKT NVSSRTPSLA  420
FSLDYAKYFL PGENQIFRLH RPGESAPWKA EFRSFGSRRW LVKGWEQFVI DNELELDDVC  480
LFERIENKKK LRMMVHIIRK EDIKILQIFV GGHILIKCTN SGNPTKYEMM GEKGCESCKK  540
WQEHYYWEHM DVSKTKFFKL MTQDSQQRFR IPDKFASSFI RQTQSSQGFD LEAPSGETWH  600
VGVTKVANDL FFSSGWGDFV KAHELQENDL LVFTFSGNSS FEVLIFDATG CEKLSSLFAG  660
AGMHKHFDGM VGQQVEQYSP SDDSDEDDDN DDDDDDDDDD TSVPSQLIES PHKVSTLRKF  720
SGKTKPSKEL RESPNSSSSC DVKHEETEEE ESDDDTYADF DYCYSRAAKQ LPDDEKSEII  780
GLASIQPGNP AFMTVLLRAH LQHKNNFLVI PSEFVDEHLH MRSHEVVLLR PNREERWHVR  840
YYQGSSSRGF RGQPWAKFVR ENELREGDVC VFELIKGARN EKKLARTTMA IHVARRRKSN  900
GRFALVD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738480.0AK373848.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3045G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
TrEMBLM8B5P70.0M8B5P7_AEGTA; B3 domain-containing protein
STRINGEMT089250.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-31B3 family protein